Dcar002474.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055253.1:4008860-4013973[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-11 1.3e-08 34.9 0.0 1 39 319 358 319 362 0.90 2 4 3.2e-12 9.5e-10 38.5 0.1 1 39 373 411 373 414 0.95 3 4 3.6e-18 1.1e-15 57.6 0.0 1 45 428 473 428 473 0.98 4 4 1.1e-15 3.2e-13 49.6 0.0 1 39 480 519 480 521 0.95
Sequence Information
- Coding Sequence
- ATGTTCGGCAAGCAAGCATTTGTCAGGTCTCTGCTTCGAACGGCGGaccaattgaaaataaaaggaTTGTGTGAAACGGACGATAAAGAAAATAGGGACAGTCGAGAGCCCTTGGATTTACCACTTTCGCTTCACTGTAAAAGTGGCAGGAAATCGCCTGGAATCAAACACCATTCGtTACCAGAAGAAGATCCTCCCGAAGCAAAATATCCGAAAACTTCCTTCCAAACCATCGAGGATTCGAATGAAATTGGCAGCGATAAAGTACAACACAAAGATACAAATAAAGAGAGAGAAAACGATAGAGAACGAGAAAAGGAGAGCGAAAACGAACAACATTCGAATGAAGAGACTGAAGAAAATGATATGCCAGTAGCTTCGGATCAACCAGAGCCGAAACGAAAGAGGCTGTCCTCGCAACAAGTCGAGCAAACTAAACCTCTAAACATGACCAGCCATGGCCTACTCTCCGGACAGACTATATTTTCTCACTTCGGCGTTGACACCGATGATTTCCCACCCGAACCACCGGCTCCGTCTGCGATTCCCGTTGGACACGTTGACATGTCAACAGCGCCCGTCGATCATTCCCCCACCAGGACTATACTTACTGGACCGATACATCGTACGGACATCTCGGATTCCACGAAGTATAcacttgaaattaaaaaagaagcCGACATCAAATTGGAAACTCTAAGATCTTATGATCAAGACAGTTTATTGGATATGGAGTCACATCTTTCGGGGCCAGACCATTCGATGGACAGTCACGATGATGGCGATAGGAGCATTCATCATCTAATGGGGCAACATGCTGATTTCAGTGGAATTCCCGGGGTATCCAATAGCCTagATGTAAATAATGATGACCAAGTACCtggaatgaaaaataacggCCATAGCGAAAATATAACACCAAATAGGTCACACGGAGGTGGACCGAAGACTTGGACTCAAGAAGATATGGATATGGCGTTGGATGCCTTAAGGAATCACAATATGAGCCTAACTAAGGCATCCGCAACTTACGGTATTCCCTCCACTACGTTATGGCAAAGAGCACATAGACTTGGGATAGATACGCCGAAGAAAGAAGGTCCCACAAAATCTTGGAcggaagaaaatttgaataatgcACTCGAAGCGTTAAGGACGGGCACGATATCGGCTAATAAAGCTAGCAAAGCTTTTGGTATTCCTAGTAGCACCTTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTCAACGCGGCACCGACGACGTGGACCCCAGACGATTTAGAAAAAGCACTGGAATCCATCAGAACTGGTCAAACTTCCGTACAAAAAGCATCGACAGAATTTGGAATCCCCACAGGAACCCTATACGGCAGATGCAAAAGGGAAGGAATTGAATTGTCGAGGTCAAACCCTACTCCGTGGTCAGAAGATGCGATGGGAGAAGCTTTGGAAGCTGTTAGGTTAGGCCATATGTCCATCAACCAAGCAGCCATCCATTACAACCTGCCTTATTCATCCTTATACGGCCGTTTTAAGCGTGGCCTTAAATTCGAAGCGGACATCGTGGATTATCACGATCTCAATCAAGATAGCCAATTGCAAATGGATCACACATTCGGAATGGAATACACTACCTCCCCACCTCAGATACAATATCAGAATCAGAACAGTTGA
- Protein Sequence
- MFGKQAFVRSLLRTADQLKIKGLCETDDKENRDSREPLDLPLSLHCKSGRKSPGIKHHSLPEEDPPEAKYPKTSFQTIEDSNEIGSDKVQHKDTNKERENDREREKESENEQHSNEETEENDMPVASDQPEPKRKRLSSQQVEQTKPLNMTSHGLLSGQTIFSHFGVDTDDFPPEPPAPSAIPVGHVDMSTAPVDHSPTRTILTGPIHRTDISDSTKYTLEIKKEADIKLETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSIHHLMGQHADFSGIPGVSNSLDVNNDDQVPGMKNNGHSENITPNRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGLKFEADIVDYHDLNQDSQLQMDHTFGMEYTTSPPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735400;
- 90% Identity
- iTF_00910433; iTF_00735934; iTF_00735400;
- 80% Identity
- -