Fvar010005.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frieseomelitta varia
Gene Symbol
-
Assembly
GCA_011392965.1
Location
WNWW01000269.1:109361-112801[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.021 1.3 8.9 4.8 1 23 92 114 92 114 0.99
2 13 0.00018 0.011 15.4 3.9 1 23 265 287 265 287 0.99
3 13 1.5e-07 9.3e-06 25.0 0.4 1 23 293 315 293 315 0.98
4 13 0.0095 0.59 9.9 1.3 1 23 340 363 340 363 0.96
5 13 0.18 11 5.9 0.4 1 23 369 393 369 393 0.95
6 13 1.5e-05 0.00091 18.8 0.4 1 23 398 420 398 420 0.96
7 13 0.0041 0.26 11.1 3.9 1 23 432 456 432 456 0.91
8 13 0.0028 0.17 11.6 2.6 1 23 458 480 458 480 0.97
9 13 5e-06 0.00031 20.3 0.2 1 23 486 508 486 508 0.96
10 13 2.7e-05 0.0017 18.0 1.2 1 23 514 536 514 536 0.95
11 13 0.0086 0.53 10.1 0.4 5 23 551 569 542 569 0.79
12 13 0.0079 0.49 10.2 7.2 1 23 575 598 575 598 0.94
13 13 0.0023 0.15 11.8 2.1 2 19 601 618 600 621 0.94

Sequence Information

Coding Sequence
ATGACTCGTGTTTTAATACAAACATGTTGTTTAACGGTCCCAGCAAACTTAGCAAATGTGGTTAGAGGAACTGATGATGCATCTTCGGCTTCTTCGTTTTCTACAATCTTTTGTCGCTTACATGAAATTACAAGAGCATTTAATGGCTCATCATCGTACCTACGTTTCACACGTGTATCATTGGACAGTCCTTCTGTGCAATCGTTATTAGAGTCTCAAACTCTAATAACTGAAGTTGAAGATTCAGCAATCGATCAGGATGAGGAAGATATATTTCAGTGTGGAAAATGCAAAAGCCAATTTACATCATTGCACATGTTCGTGTTGCACAAAAGGACACATCAAAAAACACAAGAGCAAACAGTAGATTTGAGTCAGTTTTTGGTGAATGATGAAACTCAGACTGTTCACACAGAAGACAATAGCGAAGATGTATCACAATTCAATCAAGAAACATTTGTTCAAAATGATCAACTTAGTGAACCAATTATACTTGAAGAATCTGATATGCTATTtagcaTGGATCAAGAGGGTGCTAATTACTTTACAACAGATTCCACATTTAGTGTTCCAATTATATTAAGTTCAGAAGGTTTGGATACTTTTGCAAACTCTACTATTCCAGGGGATAATGATCCTATAAAAGATGATTCAAACGATGTACCTCAAGTTCTCCAAAGTGATATTTCTCAAGAACAAAACATTAACAATACAGATAAAATTGATGTACCTACGACTGAAAATCTAATAACAGAATCTGAAACTACTACTAATCAAACGCAAAACTTGAAATATAAGTGTGGTTATTGCagcaaacaattttcaaaaaaattttattggcaACAACACGAACGTTCTCATACAGGAGAAAAACCATATCAATGTGTTGTATGCGGACGTGCATTCGCACAAAAATCAAACGTTAAAAAACATATGTCATCACATAAAGTGTGGCCGGGAACCGCTATACACTCCTTACCTCCAGaggTACCACCGGATGGAAGCATAGATCGCACCTATCATTGTCAGTTctgcaaagaaatatttgattcgTACAAAGCTCTAAAGGGGCATCTTATAGTCTCTCATTTAGCATTGAAAGTGTACAAATGTGTGCAAAGTAGCTGTAGTATGATGTTTGCTGAACTCGAAGATTTCTTAGAACATACACGCAGTCATAAGAGATCGGAATATCGTTGTCACGTGTGCGGTGAAGTGTTTAATACTCTATCTGATCTTGGGCTTCATCAATACGCTCACTCCGtccaaaaacaaaaaacaacagaaaaatattactgttGTTCCGTTTGTAAATCCTCTTTCTCTAATTTGGAGGCTTTACAACATCATACAGAAACTACAACGCACGACTATGCTTGTCTACATTGTGGAAAGAGTTTCTTAATCGAACGATTTTTGCGGCGTCATTTGAAAACACACGCCTCATCCGCACGATTTGCTTGTGAGGATTGCGGAAAGGCCTTTAAAACTGAGCAATATTTAGCCAATCATAAGTTAATACACAGCGAGGAAACACCGTTCCTATGTCCACATTGTCCAGCTAGATTCAAGCGGAAAGATCGTTTAGGTCGTCATATGTTGATTCATGATTTAACAAAGAGATTAAAGTGCCCATTCAGAACTTACTTAGGTTGTATGAGTGAATTTTCACGACCTGATAAATTGAAGCGTCATCTATTGACGCACAGCAATATCAAAAGATTTAGTTGTAGTCATTGTAATCGTAATTTCCATCGGGCACAAGCTCTTAAGCATCATGAGATGAATAAACATAGTTTAAAATGCGAAATTTGTTCACATGCATTTAAAACTAAAGAACAATTGCTAACTCATAATTGCGATCAGTCGAATGAGACTAAGAAGCACATGAGTTCACAGTTGCCTAAGAAAGCTTCTGGATCATTTAAACCAAGGAAACCTACTCCAAAGAGACAGACATCCTCAAAGACTGCAATTGGGCTTGCTGATAAGGAAAAACTAGAGAAATTTAAGGCTGACGAAATacaaagaaaaATCACCTCTGAGATGTTGAAGTCTGATGGCTATAGAGACGAAATCTGTACCAAAAAAGTAGAGAACATTTCTGTATCAAAAGAGATCGGTCCAACAATCGACACTCTTATCAAATCTGACGCAGCGGACAATGAAATCAAACGCAACACTGATACATATTCGGCTGTAGATAAGTTGACATACTACGTGCAATGGGATCATTGGCAAACTGCAAGTtgcattttataa
Protein Sequence
MTRVLIQTCCLTVPANLANVVRGTDDASSASSFSTIFCRLHEITRAFNGSSSYLRFTRVSLDSPSVQSLLESQTLITEVEDSAIDQDEEDIFQCGKCKSQFTSLHMFVLHKRTHQKTQEQTVDLSQFLVNDETQTVHTEDNSEDVSQFNQETFVQNDQLSEPIILEESDMLFSMDQEGANYFTTDSTFSVPIILSSEGLDTFANSTIPGDNDPIKDDSNDVPQVLQSDISQEQNINNTDKIDVPTTENLITESETTTNQTQNLKYKCGYCSKQFSKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEVPPDGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFAELEDFLEHTRSHKRSEYRCHVCGEVFNTLSDLGLHQYAHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHDYACLHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRTYLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCNRNFHRAQALKHHEMNKHSLKCEICSHAFKTKEQLLTHNCDQSNETKKHMSSQLPKKASGSFKPRKPTPKRQTSSKTAIGLADKEKLEKFKADEIQRKITSEMLKSDGYRDEICTKKVENISVSKEIGPTIDTLIKSDAADNEIKRNTDTYSAVDKLTYYVQWDHWQTASCIL