Basic Information

Insect: Andrena bicolor
Gene Symbol: -
Assembly: GCA_960531205.1
Location: OY482664.1:47813635-47816419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.03 2.5 9.0 4.8 1 23 45 67 45 67 0.99

2 13 0.00014 0.012 16.3 3.0 1 23 218 240 218 240 0.99

3 13 2.2e-07 1.8e-05 25.2 0.4 1 23 246 268 246 268 0.98

4 13 0.014 1.2 10.1 1.3 1 23 293 316 293 316 0.96

5 13 0.26 22 6.0 0.4 1 23 322 346 322 346 0.95

6 13 9.6e-06 0.0008 20.0 0.4 1 23 351 373 351 373 0.96

7 13 0.006 0.5 11.2 3.9 1 23 385 409 385 409 0.91

8 13 0.004 0.34 11.8 2.6 1 23 411 433 411 433 0.97

9 13 7.3e-06 0.00061 20.4 0.2 1 23 439 461 439 461 0.96

10 13 3.9e-05 0.0032 18.1 1.2 1 23 467 489 467 489 0.95

11 13 0.011 0.94 10.4 0.3 5 23 504 522 495 522 0.79

12 13 0.011 0.96 10.3 7.2 1 23 528 551 528 551 0.94

13 13 0.0018 0.15 12.8 1.3 2 19 554 571 553 574 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.03	2.5	9.0	4.8	1	23	45	67	45	67	0.99
2	13	0.00014	0.012	16.3	3.0	1	23	218	240	218	240	0.99
3	13	2.2e-07	1.8e-05	25.2	0.4	1	23	246	268	246	268	0.98
4	13	0.014	1.2	10.1	1.3	1	23	293	316	293	316	0.96
5	13	0.26	22	6.0	0.4	1	23	322	346	322	346	0.95
6	13	9.6e-06	0.0008	20.0	0.4	1	23	351	373	351	373	0.96
7	13	0.006	0.5	11.2	3.9	1	23	385	409	385	409	0.91
8	13	0.004	0.34	11.8	2.6	1	23	411	433	411	433	0.97
9	13	7.3e-06	0.00061	20.4	0.2	1	23	439	461	439	461	0.96
10	13	3.9e-05	0.0032	18.1	1.2	1	23	467	489	467	489	0.95
11	13	0.011	0.94	10.4	0.3	5	23	504	522	495	522	0.79
12	13	0.011	0.96	10.3	7.2	1	23	528	551	528	551	0.94
13	13	0.0018	0.15	12.8	1.3	2	19	554	571	553	574	0.94

Sequence Information

Coding Sequence: ATGGCGCAATCTATTTTCGACGCTTTAACAGGCGTATCGCTCGACAGTCCTTCTGTGCAATCATTGTTGGAGTCACAGACTCTAATAACCGAGGTTGAGCAGTCAGcAATCGATCAGGATGAGGAAGATATATTTCAATGTGGGAAATGCAAAAGCCAGTTCACGTCGTTGCACATGTTTGTATTGCACAAAAGGACGCACCAAAAAACGCAGGAGCAGACAATAGATTTAAGTCAGTTTTTGGTGAACGACGAGAATAATACCGTGCATACAGAGGACAACGGCCAAGAAGAATCGCAGTATAATCCTCAAGAAACGTTCGTTCAAAATGATCAACTCAGCGAGCCGATTATACTCGAAGAATCAGACATGCTGTTCAGCATGGATCAAGGTGCTAATTATTTTACAACGGATTCCACGTTTAGTGTTCCAATTATATTAAGTTCGGATGGGTTGGATAGTTTCGAAAGCTCCACTATGCCAGCGGATACTGAACCAATGAAAGATGATTCAAACGAAGTACCTCATGTTCTACAAAGCGATATGTCTCAAGAGCAGGATATTAGTAGCATAGAGAAAATTGATCTGTCGATAACGGATAATCCGATGACAGACTCGGACTCTGCGATTAATCAAACACAAAATTTAAAGTATAAGTGCGGATACTGTAACAAGCAGTTCGCAAAGAAATTTTATTGGCAGCAACACGAGCGCTCTCACACGGGGGAAAAACCATATCAATGTGTTGTATGCGGACGTGCGTTCGCACAAAAATCTAATGTGAAAAAGCACATGTCGTCGCATAAAGTATGGCCTGGCACCGCCATACACTCCCTACCTCCCGAGGCACCAGCAGACGGAAGCATAGACCGTACCTATCATTGTCAGTTTTGCAAAGAGATATTCGATTCGTACAAAGCTCTAAAGGGCCACCTTATAGTCTCTCACTTAGCACTGAAAGTGTACAAATGTGTGCAAAGTAGTTGTAGTATGATGTTCGCTGAACTCGAAGATTTCTTAGAGCATACTCGCAGCCATAAGAGATCGGAATATCGTTGTCACGTGTGCGGTGAAGTATTTAGTACTCTGTCTGATCTTGGGCTCCATCAATACGCCCACTCCGTCCAAAAACAAAAGACAACAGAGAAATATTATTGCTGCTCCGTTTGTAAATCCTCCTTCTCGAATCTGGAGGCTTTGCAACACCACACGGAGACCACGACGCACGATTACGCATGTTTACATTGCGGTAAAAGTTTCTTAATCGAACGATTTCTGCGGCGCCACTTGAAAACGCACGCCTCGTCCGCGCGATTCGCCTGCGAAGATTGCGGGAAAGCGTTCAAAACCGAGCAATATTTAGCCAATCATAAGTTAATACATAGCGAGGAAACGCCGTTTCTCTGTCCAcaTTGCCCGGCTAGATTCAAACGAAAAGATCGTTTGGGTCGGCACATGCTGATTCACGATTTAACAAAGAGATTAAAGTGTCCCTTCAGAGGTTACTTAGGCTGCATGAGCGAATTCTCGCGACCTGATAAGTTAAAGCGTCACCTTTTGACGCACAGCAATATCAAAAGATTTAGTTGTAGTCATTGTAATCGTAATTTCCATCGGGCACAAGCTCTTAAGCATCACGAAATGAATAAGCATAGTTTAAAGTGCGAAATTTGTTCACACGCATTTAAAACTAAAGAACAATTGCTAACTCATAATTGCGATCAGTCGAGTGAGACCAAGAAGCACACCAGTTCACAGTTACCTAAGAAAGCTTCTGGATCATTTAAGCCAAGGAAACCTACCCCAAAGAGACAAACATCATCAAAGACTGCGATTGGGCTTGCTGATAAGGAGAAACTAGAGAAATTTAAGGCTGACGAAATACAAAGAAAAATTACCTCCGAAACGTTTAAGTCTGGCGACTACAAAGACGAAACGTGTACCAAAAAAGTAGAGAATATTTCTGTATCAAAAGAAATCGGATCAACGATCGAAGCAATCATCAGATCTGACGCGGCGGACAATGAAATCAAACGCAACATTGATATATATTCGGTACAACAGACAGGCGAATag
Protein Sequence: MAQSIFDALTGVSLDSPSVQSLLESQTLITEVEQSAIDQDEEDIFQCGKCKSQFTSLHMFVLHKRTHQKTQEQTIDLSQFLVNDENNTVHTEDNGQEESQYNPQETFVQNDQLSEPIILEESDMLFSMDQGANYFTTDSTFSVPIILSSDGLDSFESSTMPADTEPMKDDSNEVPHVLQSDMSQEQDISSIEKIDLSITDNPMTDSDSAINQTQNLKYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPADGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFAELEDFLEHTRSHKRSEYRCHVCGEVFSTLSDLGLHQYAHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHDYACLHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRGYLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCNRNFHRAQALKHHEMNKHSLKCEICSHAFKTKEQLLTHNCDQSSETKKHTSSQLPKKASGSFKPRKPTPKRQTSSKTAIGLADKEKLEKFKADEIQRKITSETFKSGDYKDETCTKKVENISVSKEIGSTIEAIIRSDAADNEIKRNIDIYSVQQTGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00754978;
90% Identity: iTF_00734102;
80% Identity: -