Basic Information

Insect: Eufriesea mexicana
Gene Symbol: -
Assembly: GCA_001483705.1
Location: NW:593364-596181[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.021 1.1 9.0 4.8 1 23 45 67 45 67 0.99

2 13 0.00017 0.0094 15.5 3.9 1 23 215 237 215 237 0.99

3 13 1.5e-07 8.1e-06 25.2 0.4 1 23 243 265 243 265 0.98

4 13 0.0095 0.51 10.1 1.3 1 23 290 313 290 313 0.96

5 13 0.18 9.8 6.1 0.4 1 23 319 343 319 343 0.95

6 13 1.5e-05 0.00079 18.9 0.4 1 23 348 370 348 370 0.96

7 13 0.0041 0.22 11.2 3.9 1 23 382 406 382 406 0.91

8 13 0.0028 0.15 11.8 2.6 1 23 408 430 408 430 0.97

9 13 5e-06 0.00027 20.4 0.2 1 23 436 458 436 458 0.96

10 13 2.7e-05 0.0014 18.1 1.2 1 23 464 486 464 486 0.95

11 13 0.0086 0.47 10.2 0.4 5 23 501 519 492 519 0.79

12 13 0.0079 0.43 10.3 7.2 1 23 525 548 525 548 0.94

13 13 0.0013 0.07 12.8 1.3 2 19 551 568 550 571 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.021	1.1	9.0	4.8	1	23	45	67	45	67	0.99
2	13	0.00017	0.0094	15.5	3.9	1	23	215	237	215	237	0.99
3	13	1.5e-07	8.1e-06	25.2	0.4	1	23	243	265	243	265	0.98
4	13	0.0095	0.51	10.1	1.3	1	23	290	313	290	313	0.96
5	13	0.18	9.8	6.1	0.4	1	23	319	343	319	343	0.95
6	13	1.5e-05	0.00079	18.9	0.4	1	23	348	370	348	370	0.96
7	13	0.0041	0.22	11.2	3.9	1	23	382	406	382	406	0.91
8	13	0.0028	0.15	11.8	2.6	1	23	408	430	408	430	0.97
9	13	5e-06	0.00027	20.4	0.2	1	23	436	458	436	458	0.96
10	13	2.7e-05	0.0014	18.1	1.2	1	23	464	486	464	486	0.95
11	13	0.0086	0.47	10.2	0.4	5	23	501	519	492	519	0.79
12	13	0.0079	0.43	10.3	7.2	1	23	525	548	525	548	0.94
13	13	0.0013	0.07	12.8	1.3	2	19	551	568	550	571	0.94

Sequence Information

Coding Sequence: ATGGCGCAATCTATTTTCGACGCTTTAACAGGTGTATCACTAGACAGTCCTTCTGTGCAATCATTATTAGAGTCCCAGACTTTAATAACTGAAGTTGAACAGTCAGCAATTGATCAAGATGAGGAAGATATATTTCAGTGTGGAAAATGCAAAAGCCAATTTACATCATTGCACATGTTTGTGTTGCACAAAAGGACACACCAAAAGACACAAGAACAAACAGTAGATTTAAGTCAGTTTTTGGTGAATGATGAAACTCAGACTGTTCACACAGAAGACAATAGTCAAGATGTACCACAATATAATCCACAAGAAACATTTGTTCAAAATGATCAACTTAGTGAACCAATTATACTTGAAGAATCCGATATGCTATTTAGcATGGATCAGGAGGGTGCTAATTACTTTACAACGGATTCCACATTTAGTGTTCCAATTATATTAAGTTCAGAAGGTTTGGATACTTTTGCAAACTCTACTATTCCAGGGGATGAGCCCATAAAAGATGATTCAAACGAAGTACCTCAAGTTCTCCAAAGTGATATTTCTCAAGAACAAAACATTAACAATAAAGTTGATGTACCAATGACTgaaaattcaatagaatctgaaaataCTACTAATCAAACACAGAACTTAAAGTATAAGTGTGGTTATTGCAgcaaacaattttcaaaaaaattttattggcaaCAACACGAACGTTCTCATACAGGGGAAAAACCATATCAATGTGTTGTATGCGGACGTGCATTCGCACAAAAATCAAACGTTAAAAAGCATATGTCATCACATAAAGTATGGCCAGGAACTGCTATACACTCTTTACCCCCAGAgGCACCACCAGATGGAAGTATAGATCGCACCTATCATTGTCAGTTTTGCAAAGAAATATTTGACTCGTACAAAGCTCTAAAGGGCCATCTTATAGTCTCTCACTTAGCACTGAAAGTGTACAAATGTGTGCAAAGTAGTTGTAGTATGATGTTCGCTGAACTTGAAGATTTCTTAGAGCATACACGCAGTCATAAGAGATCAGAATATCGTTGCCACGTGTGCGGTGAAGTGTTTAATACTCTGTCTGATCTTGGACTTCATCAATATGCTCACTCCGTCCAAAAACAAAAAACAACAGAGAAATATTACTGTTGTTCTGTTTGTAAATCCTCTTTCTCTAATTTGGAGGCTTTACAACACCATACAGAAACCACAACGCATGACTATGCTTGTTTACATTGTGGAAAGAGTTTCTTGATCGAACGATTTTTGCGGCGTCATTTAAAAACGCACGCCTCATCCGCACGATTTGCCTGCGAAGATTGCGGAAAGGCCTTTAAAACTGAGCAATACTTAGCCAATCATAAATTAATCCATAGCGAGGAAACACCGTTCCTATGTCCTCATTGTCCAGCTCGATTCAAGCGAAAAGATCGTTTAGGACGCCATATGTTGATTCACGATTTAACTAAGAGATTGAAGTGTCCCTTCAGAACATATTTAGGTTGTATGAGTGAATTTTCACGACCTGATAAATTAAAGCGTCACCTACTGACGCATAGCAATATCAAAAGATTTAGTTGTAGTCACTGTAATCGTAATTTTCATCGGGCACAAGCTCTTAAGCATCATGAAATGAATAAACATAGTTTAAAATGCGAAATTTGTTCACACGCATTTAAAACTAAAGAACAATTGCTAACTCATAATTGCGATCAGTCGAGTGAGACTAAGAAGCATATGAGTTCACAGTTACCTAAGAAAGCTTCTGGATCATTTAAGCCAAGAAAACCTACTCCAAAGAGACAAACATCATCAAAGACTGCAATTGGGCTTGCTGATAAGGAAAAACTAGAGAAATTTAAGGCTGACGAAATACAAAGAAAAatCACCTCTGAAATGTTAAAGTCTGAGGACTACAAAGATGAAACTTGTACcaaaaaaatagaaaacattTCTATATCAAAAGAGATCGAAGCTCTCATTAAATCTGAAGCAGCGGACAATGAAATCAAACGCAACACTGATACATATGCGGTACAACATACCGGCGAATAg
Protein Sequence: MAQSIFDALTGVSLDSPSVQSLLESQTLITEVEQSAIDQDEEDIFQCGKCKSQFTSLHMFVLHKRTHQKTQEQTVDLSQFLVNDETQTVHTEDNSQDVPQYNPQETFVQNDQLSEPIILEESDMLFSMDQEGANYFTTDSTFSVPIILSSEGLDTFANSTIPGDEPIKDDSNEVPQVLQSDISQEQNINNKVDVPMTENSIESENTTNQTQNLKYKCGYCSKQFSKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFAELEDFLEHTRSHKRSEYRCHVCGEVFNTLSDLGLHQYAHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHDYACLHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRTYLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCNRNFHRAQALKHHEMNKHSLKCEICSHAFKTKEQLLTHNCDQSSETKKHMSSQLPKKASGSFKPRKPTPKRQTSSKTAIGLADKEKLEKFKADEIQRKITSEMLKSEDYKDETCTKKIENISISKEIEALIKSEAADNEIKRNTDTYAVQHTGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00754978;
90% Identity: iTF_00734102;
80% Identity: -