Basic Information

Insect: Bombus breviceps
Gene Symbol: -
Assembly: GCA_014825925.1
Location: CM026189.1:14472217-14475042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.024 1.8 9.0 4.8 1 23 45 67 45 67 0.99

2 13 0.00021 0.015 15.5 3.9 1 23 219 241 219 241 0.99

3 13 1.8e-07 1.3e-05 25.2 0.4 1 23 247 269 247 269 0.98

4 13 0.011 0.82 10.1 1.3 1 23 294 317 294 317 0.96

5 13 0.21 16 6.0 0.4 1 23 323 347 323 347 0.95

6 13 1.7e-05 0.0013 18.9 0.4 1 23 352 374 352 374 0.96

7 13 0.0049 0.36 11.2 3.9 1 23 386 410 386 410 0.91

8 13 0.0032 0.24 11.8 2.6 1 23 412 434 412 434 0.97

9 13 5.9e-06 0.00044 20.4 0.2 1 23 440 462 440 462 0.96

10 13 3.1e-05 0.0023 18.1 1.2 1 23 468 490 468 490 0.95

11 13 0.01 0.75 10.2 0.4 5 23 505 523 496 523 0.79

12 13 0.0093 0.69 10.3 7.2 1 23 529 552 529 552 0.94

13 13 0.0028 0.2 12.0 2.1 2 19 555 572 554 575 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.024	1.8	9.0	4.8	1	23	45	67	45	67	0.99
2	13	0.00021	0.015	15.5	3.9	1	23	219	241	219	241	0.99
3	13	1.8e-07	1.3e-05	25.2	0.4	1	23	247	269	247	269	0.98
4	13	0.011	0.82	10.1	1.3	1	23	294	317	294	317	0.96
5	13	0.21	16	6.0	0.4	1	23	323	347	323	347	0.95
6	13	1.7e-05	0.0013	18.9	0.4	1	23	352	374	352	374	0.96
7	13	0.0049	0.36	11.2	3.9	1	23	386	410	386	410	0.91
8	13	0.0032	0.24	11.8	2.6	1	23	412	434	412	434	0.97
9	13	5.9e-06	0.00044	20.4	0.2	1	23	440	462	440	462	0.96
10	13	3.1e-05	0.0023	18.1	1.2	1	23	468	490	468	490	0.95
11	13	0.01	0.75	10.2	0.4	5	23	505	523	496	523	0.79
12	13	0.0093	0.69	10.3	7.2	1	23	529	552	529	552	0.94
13	13	0.0028	0.2	12.0	2.1	2	19	555	572	554	575	0.94

Sequence Information

Coding Sequence: ATGGCGCAATCTATTTTCGACGCTTTAACAGGTGTATCATTGGACAGTCCTTCTGTGCAATCGTTATTGGAGTCTCAGACTCTAATAACTGAAGTTGAAGAATCAGCAATCGATCAAGATGAGGaagatatatttcaatgtgGAAAATGCAAAAGCCAATTTACATCATTACACATGTTTGTGCTGCACAAAAGAACACATCAAAAAACACAAGAACAAACAGTAGATTTGAGTCAGTTTTTGGTGAATGATGAAACTCAAACTGTTCACACAGAAGACAATAGCGAAGATGTATCACAATTTCATCCACAAGAAACATTTGTTCAAAATGATCAACTTAGTGAACCAATTATACTTGAAGAATCTGATATGCTATTTAGTATGGATCAAGAAGGTGCTAATTACTTTACAACAGATTCCACATTTAGTGTTCCAATTATATTAAGTTCAGAAGGTTTGGATACTTTTGCAAACTCTACTATTCCAGGGGATAACGATCCCATAAAAGATGATTCAAACGAAGTACCTCAAGTTCTCCAAAGTGATATTTCTCAAGAACAAAACATTAACAATACACATAAAGTCGACGTACCAATGActgaaaattcaataacaGAATCTGAAACTACTGCTACTCAAACACAAAACTTAAAATATAAGTGTGGTTATTGCagcaaacaattttcaaaaaaattttattggcaaCAACATGAACGTTCTCATACAGGGGAAAAACCATATCAGTGTGTTGTATGTGGGCGTGCATTCGCACAGAAATCAAACGTTAAAAAACATATGTCGTCACATAAAGTATGGCCAGGAACCGCTATACACTCCTTACCCCCAGAgGCACCACCAGATGGAAGCATAGATCGCACCTATCATTGTCAGTtttgcaaagaaatatttgattcgtACAAAGCTCTAAAGGGCCATCTTATAGTCTCTCACTTAGCACTGAAAGTGTACAAATGTGTGCAAAGTAGTTGTAGTATGATGTTTGCTGAACTTGAAGATTTCTTAGAACATACTCGCAGTCATAAGAGATCTGAATATCGTTGTCATGTGTGCGGTGAAGTGTTTAATACTCTGTCTGATCTTGGGCTTCATCAATACGCTCACTCCGtccaaaaacaaaaaacaacagAGAAATATTACTGTTGCTCTGTTTGTAAATCCTCCTTCTCTAATTTGGAGGCTTTGCAACATCATACAGAAACCACAACGCATGACTATGCTTGTCTACATTGTGGAAAGAGTTTCTTGATCGAACGATTTTTGCGGCGTCATTTAAAAACACACGCCTCATCTGCGCGATTTGCATGCGAGGATTGCGGAAAGGCCTTTAAAACTGAGCAATACTTAGCGAATCATAAGTTAATACATAGCGAGGAAACACCGTTTCTATGTCCACATTGCCCAGCTAGATTTAAGAGAAAAGATCGTTTGGGTCGTCATATGCTGATTCATGATCTAACAAAGAGATTAAAGTGTCCCTTCAGAACTTACTTAGGTTGTATGAGTGAATTTTCACGACCTGATAAATTAAAGCGTCACTTACTGACGCACAGCAATATCAAAAGATTTAGTTGTAGTCATTGTAATCGTAATTTCCATCGGGCACAAGCTCTTAAACATCACGAAATGAATAAACATAgtttaaaatgtgaaatttgttCACACgCATTCAAAACTAAAGAACAATTGCTAACTCATAATTGCGATCAGTCGAACGAGACTAAGAAGCACATGAGTTCACAGTTACCTAAGAAAGCTTCTGGTTCATTTAAACCAAGGAAACCTACTCCAAAGAGACAAACATCGTCAAAGACTGCAATTGGGCTTGCtgataaagaaaaagtagagAAATTTAAGGCTGacgaaatacaaagaaaaATCACCTCTGAAATGTTAAAGTCTAATGATTACAAAGATGACGTCTGTACCAAAAAGATAGAGAACATTTCTGTATCAAAAGAGATCGGTTCAACAATCGAAGCTCTTATTAAATCTGATGCAACGGACAATGAAATCAAACGCAACACTGATACATATTTGGTACAACAGACAGGCGAATag
Protein Sequence: MAQSIFDALTGVSLDSPSVQSLLESQTLITEVEESAIDQDEEDIFQCGKCKSQFTSLHMFVLHKRTHQKTQEQTVDLSQFLVNDETQTVHTEDNSEDVSQFHPQETFVQNDQLSEPIILEESDMLFSMDQEGANYFTTDSTFSVPIILSSEGLDTFANSTIPGDNDPIKDDSNEVPQVLQSDISQEQNINNTHKVDVPMTENSITESETTATQTQNLKYKCGYCSKQFSKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFAELEDFLEHTRSHKRSEYRCHVCGEVFNTLSDLGLHQYAHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHDYACLHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRTYLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCNRNFHRAQALKHHEMNKHSLKCEICSHAFKTKEQLLTHNCDQSNETKKHMSSQLPKKASGSFKPRKPTPKRQTSSKTAIGLADKEKVEKFKADEIQRKITSEMLKSNDYKDDVCTKKIENISVSKEIGSTIEALIKSDATDNEIKRNTDTYLVQQTGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00754978;
90% Identity: iTF_00734102;
80% Identity: iTF_00225410;