Basic Information

Insect: Frieseomelitta varia
Gene Symbol: -
Assembly: GCA_011392965.1
Location: WNWW01000937.1:302607-310854[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.3e-05 0.002 17.7 1.4 1 23 360 382 360 382 0.96

2 18 0.002 0.12 12.1 1.6 1 20 388 407 388 410 0.94

3 18 8.2e-06 0.00051 19.6 1.4 1 23 416 438 416 438 0.98

4 18 4.8e-05 0.003 17.2 4.4 1 21 444 464 444 466 0.95

5 18 6.4e-06 0.0004 19.9 5.6 1 23 472 494 472 494 0.99

6 18 1.5e-05 0.00091 18.8 5.3 1 23 500 522 500 522 0.97

7 18 5.6e-05 0.0034 17.0 6.9 1 23 528 550 528 550 0.96

8 18 5.5e-08 3.4e-06 26.4 2.7 1 23 556 578 556 578 0.98

9 18 4e-05 0.0025 17.4 6.7 1 23 584 606 584 606 0.97

10 18 1.3e-05 0.00078 19.0 5.8 1 23 612 634 612 634 0.98

11 18 3.3e-07 2.1e-05 24.0 2.9 1 23 640 662 640 662 0.98

12 18 5e-06 0.00031 20.3 7.8 1 23 668 690 668 690 0.98

13 18 1.6e-05 0.00097 18.7 9.1 1 23 696 718 696 718 0.98

14 18 2e-05 0.0013 18.3 7.5 1 23 724 746 724 746 0.98

15 18 0.00098 0.061 13.0 8.8 1 21 752 772 752 774 0.94

16 18 7.5e-06 0.00046 19.7 0.4 1 23 780 802 780 802 0.98

17 18 0.018 1.1 9.1 4.5 1 23 812 834 812 834 0.98

18 18 2.9e-07 1.8e-05 24.1 1.3 1 23 840 862 840 862 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.3e-05	0.002	17.7	1.4	1	23	360	382	360	382	0.96
2	18	0.002	0.12	12.1	1.6	1	20	388	407	388	410	0.94
3	18	8.2e-06	0.00051	19.6	1.4	1	23	416	438	416	438	0.98
4	18	4.8e-05	0.003	17.2	4.4	1	21	444	464	444	466	0.95
5	18	6.4e-06	0.0004	19.9	5.6	1	23	472	494	472	494	0.99
6	18	1.5e-05	0.00091	18.8	5.3	1	23	500	522	500	522	0.97
7	18	5.6e-05	0.0034	17.0	6.9	1	23	528	550	528	550	0.96
8	18	5.5e-08	3.4e-06	26.4	2.7	1	23	556	578	556	578	0.98
9	18	4e-05	0.0025	17.4	6.7	1	23	584	606	584	606	0.97
10	18	1.3e-05	0.00078	19.0	5.8	1	23	612	634	612	634	0.98
11	18	3.3e-07	2.1e-05	24.0	2.9	1	23	640	662	640	662	0.98
12	18	5e-06	0.00031	20.3	7.8	1	23	668	690	668	690	0.98
13	18	1.6e-05	0.00097	18.7	9.1	1	23	696	718	696	718	0.98
14	18	2e-05	0.0013	18.3	7.5	1	23	724	746	724	746	0.98
15	18	0.00098	0.061	13.0	8.8	1	21	752	772	752	774	0.94
16	18	7.5e-06	0.00046	19.7	0.4	1	23	780	802	780	802	0.98
17	18	0.018	1.1	9.1	4.5	1	23	812	834	812	834	0.98
18	18	2.9e-07	1.8e-05	24.1	1.3	1	23	840	862	840	862	0.97

Sequence Information

Coding Sequence: ATGTTTGAATGTATATCGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTAACTTCCAGTTCACATCATCAATCAACACCTACacatcatcatcatcaatCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAGTTACAAACATCTCAAGATTTACAACAAAGTCTTatgcaacagcaacaacagcagcaacagcaacaacaaatTGGTGTGAACATAAGCGGGAATTCATCGAACGAAGGTGGAAGTCAAAATAATACAGAGAAacctgaaaaagaaaaagagttgCGTCAACTAAATATGACGCAGTTTCAAGTGCCAGATTTAAAACCAGGAGGTCACATGATGGATGTTAGAACAGCTGATGGTTCAGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAggcaagaaaatattgcattataatacataaaacaataGTAAATGTCGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAGAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaaGTGATGGTGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGTGAAATatgtggaaaaatttttcagtttcgcTATCAGCTTATTGTTCATCGTAGATACCATACGGAAAGGAAACCTTTTACTTGTCagGTGTGTGGCAAGGCctttttaaatgcaaatgaTTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCACATGAAGCGACATGCTACCGATAAGCCATATAATTGTACTGTATGCGGAAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTACAGGTGTCAATATTGTTCAAAGACTTTTACTAGGAAAGAACATATGGTAAATCATGTTCGTAAACATACAGGTGAAACACCTCATCGATgtgatatttgtaaaaagagCTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTCTTGAACCACGTACGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTTCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCATAGGTGTGAATTCTGCCAGAGAACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAGCACACCGGAGATTCGTCGCACTGTTGTAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTTCCTTTAAAAGGTAACTTGCTTTTTCACATGCGCTCGCACAATAAAGGCAGCAATGCCGAGAGACCGTTTCGCTGCGATCTTTGTCCAAAAGACTTCATGTGCAAAGGACACTTAGTGTCTCACAGACGATCTCATTCGGACGAGCGACCACATAGCTGTCCAGATTGTGGGAAAACATTCGTTGAGAAAGGAAATATGTTGAGACATTTGAGAAAACACGCGGCGGAAGGCCCGCCGACACAAGTCAGCACGCCGTCAGCAATTCCTCAATCCGGTGTTCTGCCGATTCCGGCGGCGGCTGTCCTGGTTGGCCATCCTTTGGCACCCCCTGCGCCACCTGTAGTCCCACAACACACCGTTGTTGTGCCTACTCCCCCCGGTGTATTGACCTCCTACTAA
Protein Sequence: MFECISDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQSSVSSSSHHSSLQPNSQDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQQQIGVNISGNSSNEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKARKYCIIIHKTIVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00219250; iTF_00233364; iTF_00219932; iTF_00217879; iTF_00231452;
80% Identity: -