Basic Information

Insect: Bombus cullumanus
Gene Symbol: -
Assembly: GCA_014737535.1
Location: JACXIX010000011.1:5145464-5155519[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.1e-05 0.0038 17.6 1.4 1 23 383 405 383 405 0.96

2 18 0.0024 0.23 12.0 1.6 1 20 411 430 411 433 0.94

3 18 1e-05 0.00095 19.5 1.4 1 23 439 461 439 461 0.98

4 18 5.9e-05 0.0055 17.1 4.4 1 21 467 487 467 489 0.95

5 18 8e-06 0.00075 19.9 5.6 1 23 495 517 495 517 0.99

6 18 1.8e-05 0.0017 18.7 5.3 1 23 523 545 523 545 0.97

7 18 6.9e-05 0.0065 16.9 6.9 1 23 551 573 551 573 0.96

8 18 6.8e-08 6.3e-06 26.4 2.7 1 23 579 601 579 601 0.98

9 18 5e-05 0.0047 17.4 6.7 1 23 607 629 607 629 0.97

10 18 1.5e-05 0.0015 19.0 5.8 1 23 635 657 635 657 0.98

11 18 4.1e-07 3.9e-05 23.9 2.9 1 23 663 685 663 685 0.98

12 18 6.1e-06 0.00057 20.2 7.8 1 23 691 713 691 713 0.98

13 18 1.9e-05 0.0018 18.7 9.1 1 23 719 741 719 741 0.98

14 18 2.5e-05 0.0024 18.3 7.5 1 23 747 769 747 769 0.98

15 18 0.0012 0.11 13.0 8.8 1 21 775 795 775 797 0.94

16 18 9.3e-06 0.00087 19.7 0.4 1 23 803 825 803 825 0.98

17 18 0.015 1.4 9.6 4.3 1 23 835 857 835 857 0.99

18 18 3.6e-07 3.4e-05 24.1 1.3 1 23 863 885 863 885 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.1e-05	0.0038	17.6	1.4	1	23	383	405	383	405	0.96
2	18	0.0024	0.23	12.0	1.6	1	20	411	430	411	433	0.94
3	18	1e-05	0.00095	19.5	1.4	1	23	439	461	439	461	0.98
4	18	5.9e-05	0.0055	17.1	4.4	1	21	467	487	467	489	0.95
5	18	8e-06	0.00075	19.9	5.6	1	23	495	517	495	517	0.99
6	18	1.8e-05	0.0017	18.7	5.3	1	23	523	545	523	545	0.97
7	18	6.9e-05	0.0065	16.9	6.9	1	23	551	573	551	573	0.96
8	18	6.8e-08	6.3e-06	26.4	2.7	1	23	579	601	579	601	0.98
9	18	5e-05	0.0047	17.4	6.7	1	23	607	629	607	629	0.97
10	18	1.5e-05	0.0015	19.0	5.8	1	23	635	657	635	657	0.98
11	18	4.1e-07	3.9e-05	23.9	2.9	1	23	663	685	663	685	0.98
12	18	6.1e-06	0.00057	20.2	7.8	1	23	691	713	691	713	0.98
13	18	1.9e-05	0.0018	18.7	9.1	1	23	719	741	719	741	0.98
14	18	2.5e-05	0.0024	18.3	7.5	1	23	747	769	747	769	0.98
15	18	0.0012	0.11	13.0	8.8	1	21	775	795	775	797	0.94
16	18	9.3e-06	0.00087	19.7	0.4	1	23	803	825	803	825	0.98
17	18	0.015	1.4	9.6	4.3	1	23	835	857	835	857	0.99
18	18	3.6e-07	3.4e-05	24.1	1.3	1	23	863	885	863	885	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAGTCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGCAGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGGGCACATATACCTGCCAGCAGAGATGATAATAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAAGATTTACAACAAAGTCTTATGCAGCAGCAGCAACAACAGCAGCAACAAATTGGTGTAAACATAAGCGGAAATTCATCAAGTGAAGGCGGAAGTCAAAATAATACAGAAAAACCTGAAAAAGAGAAAGAATTGCGTCAACTAAATATGACGCAATTCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTCGTGAAAATTAGCGCTGGGAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTCGAGGACATTAATCAGCTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACAAGTTCAATTAAATAAGTTTGATATTAAATCAAGCGATGGCGAAGCTACACCAGGACCAAGCGCTTCGCCTGTATCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGCTATCAGCTTATCGTTCATCGTAGATATCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGTGGCAAGGCCTTCTTAAATGCAAATGATTTGACACGGCATGGGAAGTGTCACCTAGGTGGATCCATGTTTACCTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCTTTGGAACGTCATATGAAGCGACACGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTATAGGTGCCAGTACTGTTCAAAGACGTTTACTAGGAAGGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATGTGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTAAGTCGTTTACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACTGGTGAATCACCTCATAGGTGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCATACCGGAGATTCATCGCACTGTTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTCCCTTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGCAACGCCGAGAGACCGTACCGTTGCGATCTTTGTCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCATAGACGATCACATTCGGACGAGCGACCACATAGCTGTCCAGATTGCGGGAAAACTTTCGTTGAAAAGGGCAATATGCTGAGACACTTGAGAAAACACGCAGCGGAAGGTCCGCCAACACAAGTCAGCACACCCTCTGCAATTCCTCAATCTGGTGTTCTGCCCATTCCGGCGGCAGCAGTTCTGGTCGGCCATCCTTTGGCACCCCCTGCACCACCCGTAGTTCCACAACACACCGTAGTTGTGCCTACTCCTCCTGGTGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPVSLPGLNLDGAHIPASRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00734075;
80% Identity: -