Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026171.1:5246964-5257620[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.3e-05 0.0039 17.7 1.4 1 23 367 389 367 389 0.96

2 18 0.0026 0.23 12.1 1.6 1 20 395 414 395 417 0.94

3 18 1.1e-05 0.00096 19.6 1.4 1 23 423 445 423 445 0.98

4 18 6.2e-05 0.0056 17.2 4.4 1 21 451 471 451 473 0.95

5 18 8.3e-06 0.00075 19.9 5.6 1 23 479 501 479 501 0.99

6 18 1.9e-05 0.0017 18.8 5.3 1 23 507 529 507 529 0.97

7 18 7.2e-05 0.0065 16.9 6.9 1 23 535 557 535 557 0.96

8 18 7.1e-08 6.4e-06 26.4 2.7 1 23 563 585 563 585 0.98

9 18 5.2e-05 0.0047 17.4 6.7 1 23 591 613 591 613 0.97

10 18 1.6e-05 0.0015 19.0 5.8 1 23 619 641 619 641 0.98

11 18 4.3e-07 3.9e-05 23.9 2.9 1 23 647 669 647 669 0.98

12 18 6.4e-06 0.00058 20.3 7.8 1 23 675 697 675 697 0.98

13 18 2e-05 0.0018 18.7 9.1 1 23 703 725 703 725 0.98

14 18 2.6e-05 0.0024 18.3 7.5 1 23 731 753 731 753 0.98

15 18 0.0013 0.11 13.0 8.8 1 21 759 779 759 781 0.94

16 18 9.7e-06 0.00088 19.7 0.4 1 23 787 809 787 809 0.98

17 18 0.016 1.4 9.6 4.3 1 23 819 841 819 841 0.99

18 18 3.7e-07 3.4e-05 24.1 1.3 1 23 847 869 847 869 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.3e-05	0.0039	17.7	1.4	1	23	367	389	367	389	0.96
2	18	0.0026	0.23	12.1	1.6	1	20	395	414	395	417	0.94
3	18	1.1e-05	0.00096	19.6	1.4	1	23	423	445	423	445	0.98
4	18	6.2e-05	0.0056	17.2	4.4	1	21	451	471	451	473	0.95
5	18	8.3e-06	0.00075	19.9	5.6	1	23	479	501	479	501	0.99
6	18	1.9e-05	0.0017	18.8	5.3	1	23	507	529	507	529	0.97
7	18	7.2e-05	0.0065	16.9	6.9	1	23	535	557	535	557	0.96
8	18	7.1e-08	6.4e-06	26.4	2.7	1	23	563	585	563	585	0.98
9	18	5.2e-05	0.0047	17.4	6.7	1	23	591	613	591	613	0.97
10	18	1.6e-05	0.0015	19.0	5.8	1	23	619	641	619	641	0.98
11	18	4.3e-07	3.9e-05	23.9	2.9	1	23	647	669	647	669	0.98
12	18	6.4e-06	0.00058	20.3	7.8	1	23	675	697	675	697	0.98
13	18	2e-05	0.0018	18.7	9.1	1	23	703	725	703	725	0.98
14	18	2.6e-05	0.0024	18.3	7.5	1	23	731	753	731	753	0.98
15	18	0.0013	0.11	13.0	8.8	1	21	759	779	759	781	0.94
16	18	9.7e-06	0.00088	19.7	0.4	1	23	787	809	787	809	0.98
17	18	0.016	1.4	9.6	4.3	1	23	819	841	819	841	0.99
18	18	3.7e-07	3.4e-05	24.1	1.3	1	23	847	869	847	869	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAGTCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGCAGATACCAAGAGATGATAACAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGATCTTCAATTACAAACGTCTCAAGATTTACAACAAAGTCTTATGCAGCAGCAGCAACAACAGCAGCAACAAATTGGTGTAAACATAAGCGGAAATTCTTCGAGTGAAGGCGGAAGTCAAAACAATACAGAAAAACCTGAAAAAGAGAAGGAATTGCGTCAACTAAATATGACGCAATTCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTCGTGAAGATTAGCGCTGGGAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTCGAGGATATTAATCAGCTTTTAGCATATCATGAAGTATTCGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGGAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACAAGTTCAATTAAATAAGTTTGATATTAAATCAAGCGATGGCGAAGCTACACCAGGACCAAGCGCTTCGCCTGTGTCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGTTATCAGCTTATCGTTCATCGTAGATATCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGCGGCAAGGCCTTCTTAAATGCAAATGATTTAACACGGCATGGAAAGTGTCACCTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCCTTGGAACGTCATATGAAGCGACACGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTACAGGTGCCAGTACTGTTCAAAGACGTTTACTAGGAAAGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATGTGATATATGTAAAAAGAGCTTTACCCGCAAAGAACACTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTAAGTCGTTTACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACTGGTGAATCACCTCATAGGTGTGAATTTTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCATACCGGAGATTCATCGCACTGCTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTCCCTTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGTAACGCCGAGAGACCGTATCGTTGCGATCTTTGTCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCATAGACGATCACATTCGGACGAGCGACCACATAGCTGTCCAGATTGCGGGAAAACTTTCGTTGAAAAGGGCAATATGCTGAGACATTTGAGAAAACACGCAGCGGAAGGTCCGCCAACACAAGTCAGCACGCCCTCTGCAATTCCTCAATCCGGTGTTCTGCCCATTCCGGCGGCAGCGGTTCTGGTCGGCCATCCTTTGGCACCCCCTGCACCACCCGTAGTCCCACAACACACCGTAGTTGTGCCTACTCCTCCGGGTGTACTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00734075;
80% Identity: iTF_00233364;