Basic Information

Insect: Bombus turneri
Gene Symbol: -
Assembly: GCA_014825825.1
Location: CM026124.1:5043471-5054257[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.3e-05 0.0038 17.7 1.4 1 23 368 390 368 390 0.96

2 18 0.0026 0.23 12.1 1.6 1 20 396 415 396 418 0.94

3 18 1.1e-05 0.00096 19.6 1.4 1 23 424 446 424 446 0.98

4 18 6.2e-05 0.0055 17.2 4.4 1 21 452 472 452 474 0.95

5 18 8.3e-06 0.00075 19.9 5.6 1 23 480 502 480 502 0.99

6 18 1.9e-05 0.0017 18.8 5.3 1 23 508 530 508 530 0.97

7 18 7.2e-05 0.0065 16.9 6.9 1 23 536 558 536 558 0.96

8 18 7.1e-08 6.4e-06 26.4 2.7 1 23 564 586 564 586 0.98

9 18 5.2e-05 0.0047 17.4 6.7 1 23 592 614 592 614 0.97

10 18 1.6e-05 0.0015 19.0 5.8 1 23 620 642 620 642 0.98

11 18 4.3e-07 3.9e-05 23.9 2.9 1 23 648 670 648 670 0.98

12 18 6.4e-06 0.00058 20.3 7.8 1 23 676 698 676 698 0.98

13 18 2e-05 0.0018 18.7 9.1 1 23 704 726 704 726 0.98

14 18 2.6e-05 0.0024 18.3 7.5 1 23 732 754 732 754 0.98

15 18 0.0013 0.11 13.0 8.8 1 21 760 780 760 782 0.94

16 18 9.7e-06 0.00087 19.7 0.4 1 23 788 810 788 810 0.98

17 18 0.016 1.4 9.6 4.3 1 23 820 842 820 842 0.99

18 18 3.7e-07 3.4e-05 24.1 1.3 1 23 848 870 848 870 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.3e-05	0.0038	17.7	1.4	1	23	368	390	368	390	0.96
2	18	0.0026	0.23	12.1	1.6	1	20	396	415	396	418	0.94
3	18	1.1e-05	0.00096	19.6	1.4	1	23	424	446	424	446	0.98
4	18	6.2e-05	0.0055	17.2	4.4	1	21	452	472	452	474	0.95
5	18	8.3e-06	0.00075	19.9	5.6	1	23	480	502	480	502	0.99
6	18	1.9e-05	0.0017	18.8	5.3	1	23	508	530	508	530	0.97
7	18	7.2e-05	0.0065	16.9	6.9	1	23	536	558	536	558	0.96
8	18	7.1e-08	6.4e-06	26.4	2.7	1	23	564	586	564	586	0.98
9	18	5.2e-05	0.0047	17.4	6.7	1	23	592	614	592	614	0.97
10	18	1.6e-05	0.0015	19.0	5.8	1	23	620	642	620	642	0.98
11	18	4.3e-07	3.9e-05	23.9	2.9	1	23	648	670	648	670	0.98
12	18	6.4e-06	0.00058	20.3	7.8	1	23	676	698	676	698	0.98
13	18	2e-05	0.0018	18.7	9.1	1	23	704	726	704	726	0.98
14	18	2.6e-05	0.0024	18.3	7.5	1	23	732	754	732	754	0.98
15	18	0.0013	0.11	13.0	8.8	1	21	760	780	760	782	0.94
16	18	9.7e-06	0.00087	19.7	0.4	1	23	788	810	788	810	0.98
17	18	0.016	1.4	9.6	4.3	1	23	820	842	820	842	0.99
18	18	3.7e-07	3.4e-05	24.1	1.3	1	23	848	870	848	870	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAATCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAGTCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGCAGATACCAAGAGATGATAACAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAAGATTTACAACAAAGTCTTATGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATAAGCGGAAATTCTTCGAGTGAAGGCGGAAGTCAAAATAATACAGAAAAGCCTGAAAAAGAGAAAGAATTGCGTCAACTAAATATGACGCAATTCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTCGTGAAAATTAGCGCTGGGAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTCGAGGACATTAATCAGCTTTTAGCATATCATGAAGTATTTGGAAAATTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACAAGTTCAATTAAATAAGTTTGATATTAAATCAAGTGATGGCGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGGAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGTTATCAACTTATCGTTCATCGCAGATATCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGTGGCAAGGCCTTCTTAAATGCAAATGATTTGACACGGCATGGAAAGTGTCACCTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCTTTGGAACGTCATATGAAGCGACACGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTACAGGTGCCAGTACTGTTCAAAGACGTTTACTAGGAAGGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATGTGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTAAGTCGTTTACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACTGGTGAATCGCCTCATAGGTGTGAATTTTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCATACCGGAGATTCATCGCACTGCTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTCCCTTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAGGGCAGTAACGCCGAGAGACCGTACCGTTGCGATCTTTGCCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCATAGACGATCACATTCAGACGAGCGACCACATAGCTGTCCAGATTGTGGGAAAACTTTCGTTGAAAAGGGCAATATGCTGAGACACTTGAGAAAACACGCAGCGGAAGGTCCGCCAACACAAGTCAGCACACCCTCTGCAATTCCTCAATCCGGTGTTCTGCCCATTCCGGCGGCAGCAGTTCTGGTCGGCCATCCTTTGGCACCTCCTGCACCACCCGTAGTCCCACAACACACCGTTGTTGTGCCTACTCCTCCGGGTGTACTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQXXXXXXXXXXXXXISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00734075;
80% Identity: -