Focc011252.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763001.1:588697-634329[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.81 6.7e+02 0.4 0.1 21 44 56 79 48 83 0.88 2 15 0.013 11 6.1 0.1 21 45 84 108 72 116 0.84 3 15 0.43 3.6e+02 1.3 0.0 17 52 109 144 107 145 0.84 4 15 0.78 6.5e+02 0.5 0.1 21 44 141 164 135 168 0.87 5 15 0.6 4.9e+02 0.8 0.2 17 48 166 197 163 203 0.82 6 15 0.17 1.4e+02 2.5 0.2 7 46 184 224 178 230 0.79 7 15 0.078 64 3.7 0.0 21 51 227 257 223 259 0.86 8 15 0.24 2e+02 2.1 0.1 21 43 255 277 251 282 0.90 9 15 0.0048 4 7.5 0.1 21 52 283 314 275 314 0.86 10 15 0.0021 1.7 8.7 0.2 22 48 312 338 309 343 0.90 11 15 0.92 7.6e+02 0.2 0.1 20 48 339 367 335 369 0.84 12 15 0.011 8.8 6.4 0.1 21 45 369 393 360 402 0.89 13 15 0.015 12 6.0 0.0 21 44 428 451 410 459 0.89 14 15 0.004 3.3 7.8 0.1 21 45 484 508 477 516 0.88 15 15 2 1.6e+03 -0.8 0.1 21 46 512 537 509 543 0.85
Sequence Information
- Coding Sequence
- ATGCCTTTCCAGTGTGATGTTTGCCGGAAGGACTTCGCTACCCAACAAGCTTTCGACGTTCACATGAAAAACCACGTGGCGGGAAAGAAAACTTACAACTGCActgtgtgcgacaagaaattcttGCGACCTGCACTTCTCCGTCAACATTTACGcacgcacaccggagaaaagcccttcCAATGTAACCACTGTGAGAAGAAGTTTACGCAAAGTGGTACACTCCAAAGTCACATcagaacgcacactggagaaaagccctaCGAATGTAACCTCTGCGAGAAGAAATTCAAGCGAGCTGAGTCTCTCCGTAGACATTTCCAATcacacactgaaaacaaaaagccCTTCGAATGTACCCACTGCGGGAAGAGGTTCGCGGAAAGTAGTTATCTGCGAGTACACATCCGAttgcacactggagaaaaaccgtttgagtgcactgtttgcaacaaaacatttgcGTCGACTTCTCATCTTCGTTTCCATGTCCGAACTCACTCGGGAGAGCAAAAGCGTTCAGAGTGCACGATGTGCAGCAAGACATTTTCTCACCCGCAGGGGCTGCGTTACCATCTCCGAGCAGCGCACACTGGAGAGAGACCtttcgagtgcaccgagtgtcACAAAACGTTTGCGTCCACTACTAATCTTAGTACCCATATCAAaactcacacgggagaaaagccttttgaatgcaCTGTGTGCGACAAAAAATTCTCGCAAGATGCGCATTTGCGTGTACATTTCCGAatgcacactggagaaaagcccttcgaatGTACCCACTGCCAGAAGAAGTTCACGCAAAGTAGTCATCTACGGATACACGCCCGtacgcacactggagaaaaaccgtTTGAGTGTACTGCCTGCTACAAAACATTTAACTCCACTAGTACCCTTCGTTCACATGTGCGACTTCACACAGAAGAGAAGCCtcttgagtgcactgtgtgccataAGAAATTTTCACAAGACCAGGCGCTGCGTGCACATCTCCGGACCACGCACACGGgggagaaacctttcgagtgcacAGAATGTCACAAAAGATTTTCGTCCACTGGTGCTCTTCGTAGCCATTTGCTCCATAACCATACGacagagaagccttttgagtgcaatatgtgcgacaagaaatttcgGCAGGGGCACGTGCTGCGTGCACATATCCGgacacacacgggagaggagCCAGAGGTGCCTTTTCAGTGTACTGCGTGTAACAAGAAATTCAGGGCCCGTAGTGAAATGCTTGCACACTTTGTTgtgcacacgggagagaagccttttaaGTGCTCGGTGTGCAACAAGGGATTTATGAAAGCCAGTAATCTGCGTCAACATGTACTAACGCACACTGACGAGAAACCTTTTGAATGTACTTCCTGCCCGAAAAAGTTTGTTAAAAAAGGTGACCTGCTTAACCACAcccgaacccacacgggagagaaaccCTTCGAGTGCActttgtgcaacaagaaattttcgattGAGCGGGCGCTGCGTagacatctccgaacgcacaccggagaaaGACCTTTCAAATGTACTGAGTGTCAGAAAGCATTTGCGTCGGCTTCTTATCTTCGTATACATCTCCAAACTCACACGGTCGAGAAGAAATTTGAGTGTACCCATTGTGAGAAGAAGTTTGCTCAGAAAGACAATCTTCTAAAGCACACCCGAACCCACGCAGACACCTAA
- Protein Sequence
- MPFQCDVCRKDFATQQAFDVHMKNHVAGKKTYNCTVCDKKFLRPALLRQHLRTHTGEKPFQCNHCEKKFTQSGTLQSHIRTHTGEKPYECNLCEKKFKRAESLRRHFQSHTENKKPFECTHCGKRFAESSYLRVHIRLHTGEKPFECTVCNKTFASTSHLRFHVRTHSGEQKRSECTMCSKTFSHPQGLRYHLRAAHTGERPFECTECHKTFASTTNLSTHIKTHTGEKPFECTVCDKKFSQDAHLRVHFRMHTGEKPFECTHCQKKFTQSSHLRIHARTHTGEKPFECTACYKTFNSTSTLRSHVRLHTEEKPLECTVCHKKFSQDQALRAHLRTTHTGEKPFECTECHKRFSSTGALRSHLLHNHTTEKPFECNMCDKKFRQGHVLRAHIRTHTGEEPEVPFQCTACNKKFRARSEMLAHFVVHTGEKPFKCSVCNKGFMKASNLRQHVLTHTDEKPFECTSCPKKFVKKGDLLNHTRTHTGEKPFECTLCNKKFSIERALRRHLRTHTGERPFKCTECQKAFASASYLRIHLQTHTVEKKFECTHCEKKFAQKDNLLKHTRTHADT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733324; iTF_00733339;
- 90% Identity
- iTF_00733324; iTF_00733339;
- 80% Identity
- iTF_00733324; iTF_00733339;