Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763001.1:588697-634329[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 8.2 5.2e+03 -2.5 0.0 18 27 4 13 3 15 0.82

2 19 1.2 7.7e+02 0.1 0.7 18 41 33 53 21 55 0.76

3 19 0.00098 0.62 10.0 3.3 13 41 56 81 45 83 0.76

4 19 0.0085 5.4 7.0 2.1 14 37 85 105 75 106 0.73

5 19 0.0002 0.13 12.2 1.6 5 39 105 136 101 139 0.87

6 19 0.038 24 4.9 2.4 14 41 142 166 130 168 0.83

7 19 0.0014 0.88 9.5 2.9 6 43 163 197 163 198 0.88

8 19 0.0018 1.1 9.2 2.6 18 41 204 224 201 226 0.92

9 19 0.49 3.1e+02 1.4 0.3 17 29 231 243 223 249 0.82

10 19 0.42 2.7e+02 1.6 9.8 6 40 249 307 246 310 0.76

11 19 0.00017 0.11 12.4 1.1 13 43 311 338 306 339 0.88

12 19 0.016 10 6.1 3.9 18 43 345 367 341 368 0.91

13 19 0.03 19 5.3 0.6 15 41 371 394 368 396 0.83

14 19 1.5 9.2e+02 -0.1 0.4 18 29 405 416 399 424 0.83

15 19 0.042 27 4.8 0.5 4 39 420 451 417 455 0.80

16 19 0.23 1.5e+02 2.4 0.9 2 29 446 472 445 483 0.79

17 19 0.0013 0.79 9.7 1.5 9 41 481 509 474 510 0.81

18 19 2.1 1.3e+03 -0.6 0.2 18 41 517 537 514 539 0.81

19 19 0.0019 1.2 9.1 2.5 13 38 540 562 533 566 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	8.2	5.2e+03	-2.5	0.0	18	27	4	13	3	15	0.82
2	19	1.2	7.7e+02	0.1	0.7	18	41	33	53	21	55	0.76
3	19	0.00098	0.62	10.0	3.3	13	41	56	81	45	83	0.76
4	19	0.0085	5.4	7.0	2.1	14	37	85	105	75	106	0.73
5	19	0.0002	0.13	12.2	1.6	5	39	105	136	101	139	0.87
6	19	0.038	24	4.9	2.4	14	41	142	166	130	168	0.83
7	19	0.0014	0.88	9.5	2.9	6	43	163	197	163	198	0.88
8	19	0.0018	1.1	9.2	2.6	18	41	204	224	201	226	0.92
9	19	0.49	3.1e+02	1.4	0.3	17	29	231	243	223	249	0.82
10	19	0.42	2.7e+02	1.6	9.8	6	40	249	307	246	310	0.76
11	19	0.00017	0.11	12.4	1.1	13	43	311	338	306	339	0.88
12	19	0.016	10	6.1	3.9	18	43	345	367	341	368	0.91
13	19	0.03	19	5.3	0.6	15	41	371	394	368	396	0.83
14	19	1.5	9.2e+02	-0.1	0.4	18	29	405	416	399	424	0.83
15	19	0.042	27	4.8	0.5	4	39	420	451	417	455	0.80
16	19	0.23	1.5e+02	2.4	0.9	2	29	446	472	445	483	0.79
17	19	0.0013	0.79	9.7	1.5	9	41	481	509	474	510	0.81
18	19	2.1	1.3e+03	-0.6	0.2	18	41	517	537	514	539	0.81
19	19	0.0019	1.2	9.1	2.5	13	38	540	562	533	566	0.78

Sequence Information

Coding Sequence: ATGCCTTTCCAGTGTGATGTTTGCCGGAAGGACTTCGCTACCCAACAAGCTTTCGACGTTCACATGAAAAACCACGTGGCGGGAAAGAAAACTTACAACTGCActgtgtgcgacaagaaattcttGCGACCTGCACTTCTCCGTCAACATTTACGcacgcacaccggagaaaagcccttcCAATGTAACCACTGTGAGAAGAAGTTTACGCAAAGTGGTACACTCCAAAGTCACATcagaacgcacactggagaaaagccctaCGAATGTAACCTCTGCGAGAAGAAATTCAAGCGAGCTGAGTCTCTCCGTAGACATTTCCAATcacacactgaaaacaaaaagccCTTCGAATGTACCCACTGCGGGAAGAGGTTCGCGGAAAGTAGTTATCTGCGAGTACACATCCGAttgcacactggagaaaaaccgtttgagtgcactgtttgcaacaaaacatttgcGTCGACTTCTCATCTTCGTTTCCATGTCCGAACTCACTCGGGAGAGCAAAAGCGTTCAGAGTGCACGATGTGCAGCAAGACATTTTCTCACCCGCAGGGGCTGCGTTACCATCTCCGAGCAGCGCACACTGGAGAGAGACCtttcgagtgcaccgagtgtcACAAAACGTTTGCGTCCACTACTAATCTTAGTACCCATATCAAaactcacacgggagaaaagccttttgaatgcaCTGTGTGCGACAAAAAATTCTCGCAAGATGCGCATTTGCGTGTACATTTCCGAatgcacactggagaaaagcccttcgaatGTACCCACTGCCAGAAGAAGTTCACGCAAAGTAGTCATCTACGGATACACGCCCGtacgcacactggagaaaaaccgtTTGAGTGTACTGCCTGCTACAAAACATTTAACTCCACTAGTACCCTTCGTTCACATGTGCGACTTCACACAGAAGAGAAGCCtcttgagtgcactgtgtgccataAGAAATTTTCACAAGACCAGGCGCTGCGTGCACATCTCCGGACCACGCACACGGgggagaaacctttcgagtgcacAGAATGTCACAAAAGATTTTCGTCCACTGGTGCTCTTCGTAGCCATTTGCTCCATAACCATACGacagagaagccttttgagtgcaatatgtgcgacaagaaatttcgGCAGGGGCACGTGCTGCGTGCACATATCCGgacacacacgggagaggagCCAGAGGTGCCTTTTCAGTGTACTGCGTGTAACAAGAAATTCAGGGCCCGTAGTGAAATGCTTGCACACTTTGTTgtgcacacgggagagaagccttttaaGTGCTCGGTGTGCAACAAGGGATTTATGAAAGCCAGTAATCTGCGTCAACATGTACTAACGCACACTGACGAGAAACCTTTTGAATGTACTTCCTGCCCGAAAAAGTTTGTTAAAAAAGGTGACCTGCTTAACCACAcccgaacccacacgggagagaaaccCTTCGAGTGCActttgtgcaacaagaaattttcgattGAGCGGGCGCTGCGTagacatctccgaacgcacaccggagaaaGACCTTTCAAATGTACTGAGTGTCAGAAAGCATTTGCGTCGGCTTCTTATCTTCGTATACATCTCCAAACTCACACGGTCGAGAAGAAATTTGAGTGTACCCATTGTGAGAAGAAGTTTGCTCAGAAAGACAATCTTCTAAAGCACACCCGAACCCACGCAGACACCTAA
Protein Sequence: MPFQCDVCRKDFATQQAFDVHMKNHVAGKKTYNCTVCDKKFLRPALLRQHLRTHTGEKPFQCNHCEKKFTQSGTLQSHIRTHTGEKPYECNLCEKKFKRAESLRRHFQSHTENKKPFECTHCGKRFAESSYLRVHIRLHTGEKPFECTVCNKTFASTSHLRFHVRTHSGEQKRSECTMCSKTFSHPQGLRYHLRAAHTGERPFECTECHKTFASTTNLSTHIKTHTGEKPFECTVCDKKFSQDAHLRVHFRMHTGEKPFECTHCQKKFTQSSHLRIHARTHTGEKPFECTACYKTFNSTSTLRSHVRLHTEEKPLECTVCHKKFSQDQALRAHLRTTHTGEKPFECTECHKRFSSTGALRSHLLHNHTTEKPFECNMCDKKFRQGHVLRAHIRTHTGEEPEVPFQCTACNKKFRARSEMLAHFVVHTGEKPFKCSVCNKGFMKASNLRQHVLTHTDEKPFECTSCPKKFVKKGDLLNHTRTHTGEKPFECTLCNKKFSIERALRRHLRTHTGERPFKCTECQKAFASASYLRIHLQTHTVEKKFECTHCEKKFAQKDNLLKHTRTHADT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733666;
90% Identity: iTF_00733666;
80% Identity: iTF_00733666;