Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763001.1:588697-634329[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.2e-05 0.005 17.1 0.6 1 23 3 25 3 25 0.98

2 20 9.7e-06 0.00052 20.2 0.8 1 23 32 54 32 54 0.98

3 20 1.7e-07 9.2e-06 25.7 4.1 1 23 60 82 60 82 0.99

4 20 2.9e-06 0.00016 21.8 2.2 1 23 88 110 88 110 0.98

5 20 2.6e-07 1.4e-05 25.2 1.7 1 23 117 139 117 139 0.98

6 20 4.8e-05 0.0026 18.0 3.5 1 23 145 167 145 167 0.98

7 20 3.9e-05 0.0021 18.3 1.1 2 23 175 197 174 197 0.95

8 20 1.6e-06 8.9e-05 22.6 3.2 1 23 203 225 203 225 0.98

9 20 5.2e-06 0.00028 21.0 2.5 1 23 231 253 231 253 0.98

10 20 1.1e-06 5.8e-05 23.2 6.5 1 23 259 281 259 281 0.98

11 20 0.00013 0.0071 16.6 1.7 1 23 287 309 287 309 0.98

12 20 1.2e-05 0.00067 19.9 1.8 2 23 316 338 315 338 0.96

13 20 8.3e-05 0.0045 17.2 3.8 1 23 344 367 344 367 0.95

14 20 5.1e-06 0.00028 21.1 2.1 1 23 373 395 373 395 0.99

15 20 0.0046 0.25 11.8 0.6 1 23 404 426 404 426 0.94

16 20 2.1e-06 0.00011 22.3 0.9 1 23 432 454 432 454 0.99

17 20 6.8e-06 0.00037 20.7 1.2 1 23 460 482 460 482 0.98

18 20 4.4e-06 0.00024 21.3 1.6 1 23 488 510 488 510 0.99

19 20 2.4e-07 1.3e-05 25.2 0.6 1 23 516 538 516 538 0.99

20 20 3.7e-07 2e-05 24.6 4.1 1 23 544 566 544 566 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.2e-05	0.005	17.1	0.6	1	23	3	25	3	25	0.98
2	20	9.7e-06	0.00052	20.2	0.8	1	23	32	54	32	54	0.98
3	20	1.7e-07	9.2e-06	25.7	4.1	1	23	60	82	60	82	0.99
4	20	2.9e-06	0.00016	21.8	2.2	1	23	88	110	88	110	0.98
5	20	2.6e-07	1.4e-05	25.2	1.7	1	23	117	139	117	139	0.98
6	20	4.8e-05	0.0026	18.0	3.5	1	23	145	167	145	167	0.98
7	20	3.9e-05	0.0021	18.3	1.1	2	23	175	197	174	197	0.95
8	20	1.6e-06	8.9e-05	22.6	3.2	1	23	203	225	203	225	0.98
9	20	5.2e-06	0.00028	21.0	2.5	1	23	231	253	231	253	0.98
10	20	1.1e-06	5.8e-05	23.2	6.5	1	23	259	281	259	281	0.98
11	20	0.00013	0.0071	16.6	1.7	1	23	287	309	287	309	0.98
12	20	1.2e-05	0.00067	19.9	1.8	2	23	316	338	315	338	0.96
13	20	8.3e-05	0.0045	17.2	3.8	1	23	344	367	344	367	0.95
14	20	5.1e-06	0.00028	21.1	2.1	1	23	373	395	373	395	0.99
15	20	0.0046	0.25	11.8	0.6	1	23	404	426	404	426	0.94
16	20	2.1e-06	0.00011	22.3	0.9	1	23	432	454	432	454	0.99
17	20	6.8e-06	0.00037	20.7	1.2	1	23	460	482	460	482	0.98
18	20	4.4e-06	0.00024	21.3	1.6	1	23	488	510	488	510	0.99
19	20	2.4e-07	1.3e-05	25.2	0.6	1	23	516	538	516	538	0.99
20	20	3.7e-07	2e-05	24.6	4.1	1	23	544	566	544	566	0.99

Sequence Information

Coding Sequence: ATGCCTTTCCAGTGTGATGTTTGCCGGAAGGACTTCGCTACCCAACAAGCTTTCGACGTTCACATGAAAAACCACGTGGCGGGAAAGAAAACTTACAACTGCActgtgtgcgacaagaaattcttGCGACCTGCACTTCTCCGTCAACATTTACGcacgcacaccggagaaaagcccttcCAATGTAACCACTGTGAGAAGAAGTTTACGCAAAGTGGTACACTCCAAAGTCACATcagaacgcacactggagaaaagccctaCGAATGTAACCTCTGCGAGAAGAAATTCAAGCGAGCTGAGTCTCTCCGTAGACATTTCCAATcacacactgaaaacaaaaagccCTTCGAATGTACCCACTGCGGGAAGAGGTTCGCGGAAAGTAGTTATCTGCGAGTACACATCCGAttgcacactggagaaaaaccgtttgagtgcactgtttgcaacaaaacatttgcGTCGACTTCTCATCTTCGTTTCCATGTCCGAACTCACTCGGGAGAGCAAAAGCGTTCAGAGTGCACGATGTGCAGCAAGACATTTTCTCACCCGCAGGGGCTGCGTTACCATCTCCGAGCAGCGCACACTGGAGAGAGACCtttcgagtgcaccgagtgtcACAAAACGTTTGCGTCCACTACTAATCTTAGTACCCATATCAAaactcacacgggagaaaagccttttgaatgcaCTGTGTGCGACAAAAAATTCTCGCAAGATGCGCATTTGCGTGTACATTTCCGAatgcacactggagaaaagcccttcgaatGTACCCACTGCCAGAAGAAGTTCACGCAAAGTAGTCATCTACGGATACACGCCCGtacgcacactggagaaaaaccgtTTGAGTGTACTGCCTGCTACAAAACATTTAACTCCACTAGTACCCTTCGTTCACATGTGCGACTTCACACAGAAGAGAAGCCtcttgagtgcactgtgtgccataAGAAATTTTCACAAGACCAGGCGCTGCGTGCACATCTCCGGACCACGCACACGGgggagaaacctttcgagtgcacAGAATGTCACAAAAGATTTTCGTCCACTGGTGCTCTTCGTAGCCATTTGCTCCATAACCATACGacagagaagccttttgagtgcaatatgtgcgacaagaaatttcgGCAGGGGCACGTGCTGCGTGCACATATCCGgacacacacgggagaggagCCAGAGGTGCCTTTTCAGTGTACTGCGTGTAACAAGAAATTCAGGGCCCGTAGTGAAATGCTTGCACACTTTGTTgtgcacacgggagagaagccttttaaGTGCTCGGTGTGCAACAAGGGATTTATGAAAGCCAGTAATCTGCGTCAACATGTACTAACGCACACTGACGAGAAACCTTTTGAATGTACTTCCTGCCCGAAAAAGTTTGTTAAAAAAGGTGACCTGCTTAACCACAcccgaacccacacgggagagaaaccCTTCGAGTGCActttgtgcaacaagaaattttcgattGAGCGGGCGCTGCGTagacatctccgaacgcacaccggagaaaGACCTTTCAAATGTACTGAGTGTCAGAAAGCATTTGCGTCGGCTTCTTATCTTCGTATACATCTCCAAACTCACACGGTCGAGAAGAAATTTGAGTGTACCCATTGTGAGAAGAAGTTTGCTCAGAAAGACAATCTTCTAAAGCACACCCGAACCCACGCAGACACCTAA
Protein Sequence: MPFQCDVCRKDFATQQAFDVHMKNHVAGKKTYNCTVCDKKFLRPALLRQHLRTHTGEKPFQCNHCEKKFTQSGTLQSHIRTHTGEKPYECNLCEKKFKRAESLRRHFQSHTENKKPFECTHCGKRFAESSYLRVHIRLHTGEKPFECTVCNKTFASTSHLRFHVRTHSGEQKRSECTMCSKTFSHPQGLRYHLRAAHTGERPFECTECHKTFASTTNLSTHIKTHTGEKPFECTVCDKKFSQDAHLRVHFRMHTGEKPFECTHCQKKFTQSSHLRIHARTHTGEKPFECTACYKTFNSTSTLRSHVRLHTEEKPLECTVCHKKFSQDQALRAHLRTTHTGEKPFECTECHKRFSSTGALRSHLLHNHTTEKPFECNMCDKKFRQGHVLRAHIRTHTGEEPEVPFQCTACNKKFRARSEMLAHFVVHTGEKPFKCSVCNKGFMKASNLRQHVLTHTDEKPFECTSCPKKFVKKGDLLNHTRTHTGEKPFECTLCNKKFSIERALRRHLRTHTGERPFKCTECQKAFASASYLRIHLQTHTVEKKFECTHCEKKFAQKDNLLKHTRTHADT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733666;
90% Identity: iTF_00733666;
80% Identity: iTF_00733666;