Ffus001614.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- Prdm1
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000069.1:20973-25032[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7 3.1e+04 -4.9 1.2 6 13 131 138 130 154 0.50 2 9 0.47 2.1e+03 -0.3 0.0 15 48 439 471 435 475 0.73 3 9 0.0007 3.1 8.8 0.0 21 48 472 499 464 503 0.86 4 9 0.00028 1.3 10.0 0.0 21 48 500 527 496 531 0.87 5 9 0.0043 19 6.2 0.0 21 48 528 555 524 559 0.87 6 9 0.0095 42 5.1 0.0 21 46 556 581 554 584 0.91 7 9 0.0007 3.2 8.7 0.0 21 52 584 615 581 617 0.88 8 9 0.0081 36 5.4 0.2 21 44 640 663 630 667 0.86 9 9 0.0024 11 7.0 0.0 21 44 668 691 664 697 0.90
Sequence Information
- Coding Sequence
- ATGTCTAGTAGCTCCGATGAGAGTGACTATGAAGACATTCGGGAATTCTTTTCGGTTAGTGATTGGCAGGAGATGTCAAATTATGAAAAGAGTAGCTACAAGAGCGCGAAAGAAAATTTTCACGCAATGCAAGAGGCAGGTCTCACCCCAAAACCACCTCAATTCATGCGCAAGAAGCCACAACCCAAAGTAGTCAAAACAACAGCTGTGAAGAGGGTTAAGTACGAAGAGAATGATGATGACTTTGATGAGAAAGATTTGGATTGGTCGCCCAAAAAGGAAAACCAGacctcaaaatgtACCCGCCCCTCTCGTGCTAAGGCGTTTGTCGTGCCAGCAAAAGTGAAGAGGCCCGCGCGAGGGAAGGAGAACGTTGCCTTGTCGACCCCAGCTGCTCACCCGCCCGAAGCTCAGGGTCGCCAGCCCGGACCGTCGAGGGCCGCGAGCTGCGAGCCGACGGCAGCCGCCTCTGTCCAGGGCGTCCAGGAACCGGGTCCGTCAGGCGCCGCCCGCTACCCCAAAAGAACCGGCAGCCGGGGCAAGGTGTACGTCGAGGACCCCGACCTGGACGACGACGACTTCCTCTTTTGCGACGACTGCGGGCGCGAATGGGAGGGTGACTGCCCCGAGCACGGCCCCCTCCAGATCGTCCCGGACACAGAGgTGGCGGCCGGCGtccccgagcgcgcgcggcacaCGGTGCCGAGCTCCCTGGCGGTGCTGCAGAGCAAGATCCCGGACGCGGGACTCGGCGTCTGGGCCAAGGAGCCCATCCCCCGCCGGGTGCGCTTCGGCCCCTACGAGGGGGACATCACGACCAAGAGGGACACGGGCTACGGCTGGGAGATCCGCCGCGAGGGCAAGACGGTGCACTGCGTGGACGCTCTTGACGTCACCCACTCGAACTGGATGCGGTACGTGAACTGCGCTCGGCACGCCGGCGAGGAGAACCTGCACCCGTACCAGCACAAGGGCCGGCTGTACTACCGCACGGTGATCGAAATCCCGGCGCACGCCGAGCTTCTCGTGTGGTACGGCGACTCGTACGCCAAGGACCTGGGCATCGACCCCAAGGCGCACCGGGAGGCGGCGGCCGACTCCCGCCCCTACAACGGATCCTTCCGCTGCGAGCGGCAGTGCGGCCTCAGCTTCGTGagccccctgctgctggcccaaCACCGGCGCGCTGCCCGGTGTCACGCAGAGATCAGGCGCCGGCGAGCGTGCAGCGTGGCCGCGGCTGCGTCCGCGAccggggcagaggggcgggtGGCCGCGGTGTCGTCAGCGCCAGAGCTGCAGCCCGCCGACAGGCCCGTCGACAGGTCCGCCGCCCGGAAGTGGAGCTGCGATGAGTGCGGAGCAGAGTTTGCTAATACCTGGAAACTCAAGAGGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGACGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGAAGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGAAAGCTCCCATCTCAAGAAGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGAAAGCTCCCATCTCAAGAAGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGACGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGACAGGTCCTATTTCAAGACGCACATGCGCATCCACTCTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGTTAGAGGCTGCGACCTCCGGAGGCACGAGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACTTGCGGGGCTGCGTTTGTTGGCAGCAGCGACCTCCGGAGGCACGAGCGCATTCACACGGAGGACAAGACCTACAGCTGCAGCACCTGA
- Protein Sequence
- MSSSSDESDYEDIREFFSVSDWQEMSNYEKSSYKSAKENFHAMQEAGLTPKPPQFMRKKPQPKVVKTTAVKRVKYEENDDDFDEKDLDWSPKKENQTSKCTRPSRAKAFVVPAKVKRPARGKENVALSTPAAHPPEAQGRQPGPSRAASCEPTAAASVQGVQEPGPSGAARYPKRTGSRGKVYVEDPDLDDDDFLFCDDCGREWEGDCPEHGPLQIVPDTEVAAGVPERARHTVPSSLAVLQSKIPDAGLGVWAKEPIPRRVRFGPYEGDITTKRDTGYGWEIRREGKTVHCVDALDVTHSNWMRYVNCARHAGEENLHPYQHKGRLYYRTVIEIPAHAELLVWYGDSYAKDLGIDPKAHREAAADSRPYNGSFRCERQCGLSFVSPLLLAQHRRAARCHAEIRRRRACSVAAAASATGAEGRVAAVSSAPELQPADRPVDRSAARKWSCDECGAEFANTWKLKRHMRIHTGEKPYSCSTCGAAFAQSSDLKTHMRIHTGEKPYSCSTCGAAFAQSSDLKKHMRIHTGEKPYSCSTCGAAFAESSHLKKHMRIHTGEKPYSCSTCGAAFAESSHLKKHMRIHTGEKPYSCSTCGAAFAQSSDLKTHMRIHTGEKPYSCSTCGAAFADRSYFKTHMRIHSGEKPYSCSTCGAAFVRGCDLRRHERIHTGEKPYSCSTCGAAFVGSSDLRRHERIHTEDKTYSCST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732354;
- 90% Identity
- iTF_00732354;
- 80% Identity
- iTF_00732029;