Basic Information

Insect: Frankliniella fusca
Gene Symbol: Prdm1
Assembly: GCA_029379305.1
Location: JAHWGI010000069.1:20973-25032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0068 0.58 11.5 0.7 1 21 374 395 374 400 0.95

2 10 1.2e-05 0.001 20.2 0.1 2 23 449 470 448 470 0.97

3 10 2.2e-07 1.9e-05 25.6 0.2 1 23 476 498 476 498 0.98

4 10 9.1e-08 7.9e-06 26.8 0.2 1 23 504 526 504 526 0.98

5 10 4.4e-07 3.8e-05 24.7 0.9 1 23 532 554 532 554 0.98

6 10 4.4e-07 3.8e-05 24.7 0.9 1 23 560 582 560 582 0.98

7 10 2.2e-07 1.9e-05 25.6 0.2 1 23 588 610 588 610 0.98

8 10 1.6e-06 0.00014 22.9 0.5 1 23 616 638 616 638 0.98

9 10 0.00016 0.014 16.6 0.7 1 23 644 666 644 666 0.98

10 10 1e-05 0.00088 20.4 0.1 1 23 672 694 672 694 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0068	0.58	11.5	0.7	1	21	374	395	374	400	0.95
2	10	1.2e-05	0.001	20.2	0.1	2	23	449	470	448	470	0.97
3	10	2.2e-07	1.9e-05	25.6	0.2	1	23	476	498	476	498	0.98
4	10	9.1e-08	7.9e-06	26.8	0.2	1	23	504	526	504	526	0.98
5	10	4.4e-07	3.8e-05	24.7	0.9	1	23	532	554	532	554	0.98
6	10	4.4e-07	3.8e-05	24.7	0.9	1	23	560	582	560	582	0.98
7	10	2.2e-07	1.9e-05	25.6	0.2	1	23	588	610	588	610	0.98
8	10	1.6e-06	0.00014	22.9	0.5	1	23	616	638	616	638	0.98
9	10	0.00016	0.014	16.6	0.7	1	23	644	666	644	666	0.98
10	10	1e-05	0.00088	20.4	0.1	1	23	672	694	672	694	0.98

Sequence Information

Coding Sequence: ATGTCTAGTAGCTCCGATGAGAGTGACTATGAAGACATTCGGGAATTCTTTTCGGTTAGTGATTGGCAGGAGATGTCAAATTATGAAAAGAGTAGCTACAAGAGCGCGAAAGAAAATTTTCACGCAATGCAAGAGGCAGGTCTCACCCCAAAACCACCTCAATTCATGCGCAAGAAGCCACAACCCAAAGTAGTCAAAACAACAGCTGTGAAGAGGGTTAAGTACGAAGAGAATGATGATGACTTTGATGAGAAAGATTTGGATTGGTCGCCCAAAAAGGAAAACCAGacctcaaaatgtACCCGCCCCTCTCGTGCTAAGGCGTTTGTCGTGCCAGCAAAAGTGAAGAGGCCCGCGCGAGGGAAGGAGAACGTTGCCTTGTCGACCCCAGCTGCTCACCCGCCCGAAGCTCAGGGTCGCCAGCCCGGACCGTCGAGGGCCGCGAGCTGCGAGCCGACGGCAGCCGCCTCTGTCCAGGGCGTCCAGGAACCGGGTCCGTCAGGCGCCGCCCGCTACCCCAAAAGAACCGGCAGCCGGGGCAAGGTGTACGTCGAGGACCCCGACCTGGACGACGACGACTTCCTCTTTTGCGACGACTGCGGGCGCGAATGGGAGGGTGACTGCCCCGAGCACGGCCCCCTCCAGATCGTCCCGGACACAGAGgTGGCGGCCGGCGtccccgagcgcgcgcggcacaCGGTGCCGAGCTCCCTGGCGGTGCTGCAGAGCAAGATCCCGGACGCGGGACTCGGCGTCTGGGCCAAGGAGCCCATCCCCCGCCGGGTGCGCTTCGGCCCCTACGAGGGGGACATCACGACCAAGAGGGACACGGGCTACGGCTGGGAGATCCGCCGCGAGGGCAAGACGGTGCACTGCGTGGACGCTCTTGACGTCACCCACTCGAACTGGATGCGGTACGTGAACTGCGCTCGGCACGCCGGCGAGGAGAACCTGCACCCGTACCAGCACAAGGGCCGGCTGTACTACCGCACGGTGATCGAAATCCCGGCGCACGCCGAGCTTCTCGTGTGGTACGGCGACTCGTACGCCAAGGACCTGGGCATCGACCCCAAGGCGCACCGGGAGGCGGCGGCCGACTCCCGCCCCTACAACGGATCCTTCCGCTGCGAGCGGCAGTGCGGCCTCAGCTTCGTGagccccctgctgctggcccaaCACCGGCGCGCTGCCCGGTGTCACGCAGAGATCAGGCGCCGGCGAGCGTGCAGCGTGGCCGCGGCTGCGTCCGCGAccggggcagaggggcgggtGGCCGCGGTGTCGTCAGCGCCAGAGCTGCAGCCCGCCGACAGGCCCGTCGACAGGTCCGCCGCCCGGAAGTGGAGCTGCGATGAGTGCGGAGCAGAGTTTGCTAATACCTGGAAACTCAAGAGGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGACGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGAAGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGAAAGCTCCCATCTCAAGAAGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGAAAGCTCCCATCTCAAGAAGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGACGCACATGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTGACAGGTCCTATTTCAAGACGCACATGCGCATCCACTCTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGTTAGAGGCTGCGACCTCCGGAGGCACGAGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACTTGCGGGGCTGCGTTTGTTGGCAGCAGCGACCTCCGGAGGCACGAGCGCATTCACACGGAGGACAAGACCTACAGCTGCAGCACCTGA
Protein Sequence: MSSSSDESDYEDIREFFSVSDWQEMSNYEKSSYKSAKENFHAMQEAGLTPKPPQFMRKKPQPKVVKTTAVKRVKYEENDDDFDEKDLDWSPKKENQTSKCTRPSRAKAFVVPAKVKRPARGKENVALSTPAAHPPEAQGRQPGPSRAASCEPTAAASVQGVQEPGPSGAARYPKRTGSRGKVYVEDPDLDDDDFLFCDDCGREWEGDCPEHGPLQIVPDTEVAAGVPERARHTVPSSLAVLQSKIPDAGLGVWAKEPIPRRVRFGPYEGDITTKRDTGYGWEIRREGKTVHCVDALDVTHSNWMRYVNCARHAGEENLHPYQHKGRLYYRTVIEIPAHAELLVWYGDSYAKDLGIDPKAHREAAADSRPYNGSFRCERQCGLSFVSPLLLAQHRRAARCHAEIRRRRACSVAAAASATGAEGRVAAVSSAPELQPADRPVDRSAARKWSCDECGAEFANTWKLKRHMRIHTGEKPYSCSTCGAAFAQSSDLKTHMRIHTGEKPYSCSTCGAAFAQSSDLKKHMRIHTGEKPYSCSTCGAAFAESSHLKKHMRIHTGEKPYSCSTCGAAFAESSHLKKHMRIHTGEKPYSCSTCGAAFAQSSDLKTHMRIHTGEKPYSCSTCGAAFADRSYFKTHMRIHSGEKPYSCSTCGAAFVRGCDLRRHERIHTGEKPYSCSTCGAAFVGSSDLRRHERIHTEDKTYSCST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732354;
90% Identity: iTF_00732354;
80% Identity: iTF_00732356;