Ffus001611.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- Prdm1
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000069.1:5007-9418[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.74 3.3e+03 -0.9 0.0 26 46 449 469 437 471 0.83 2 9 0.0017 7.6 7.5 0.0 21 48 472 499 461 503 0.87 3 9 0.0033 15 6.6 0.0 21 51 500 530 497 532 0.87 4 9 0.065 2.9e+02 2.5 0.1 21 45 528 552 525 556 0.89 5 9 0.00026 1.2 10.1 0.1 21 48 556 583 552 587 0.87 6 9 0.00076 3.4 8.6 0.0 21 51 584 614 581 615 0.87 7 9 0.00047 2.1 9.3 0.0 22 44 613 635 608 640 0.90 8 9 0.0015 6.8 7.7 0.0 21 47 640 666 636 671 0.87 9 9 0.0061 27 5.7 0.0 21 47 668 694 664 700 0.85
Sequence Information
- Coding Sequence
- ATGTCTGGTAGCTCCGATGAGAGTGACTATGAAGACATTCGGGAATTCTTTTCGGTTAGTGATTGGCAGGAGATGTCAAATTATGAAAAGAGTAGCTACAAGAGCGCGAAAGAAAATTTTCACGCAATGCAAGAGGCAGGTCTCACCCCCAAACCACCTCAATTCATGCGCAACAAGCCACAACCCAAAGTAATCAAAAAAACAGCTGTGAAGAGGGTTAAGTACCAAGAGAATGATGATGACTTTGATGAGAAAGATTTGGATTGGTCGCCCAAGAAAGAAAACCAGACCGCAAAATGTACCCGCCCCTCTCGTGCTAAGGCGTTTGTCGTGCCAGCAAAAGTGAAGAGGCCCGCGCGAGGGAAGGAGAACGTTGCCCCGTCGACCCCAGCTGCTCACCCGCCCGAAGCTCAGTGTCGCCAGGCCGGACCGTCGAGGACCGCGAGCTGCGAGCCGACGGCAGCCGCCTCTGTCCAGGGCGTCCAGGAACCGGGTCCGTCAGGCGCCGCCCGCTACCCCAAAAGAACCGGCAGCCGGGGCAAGGTGTACGTCGAGGACCCCGACCTGGACGACGACGACTTCCTCTTTTGCGACGACTGCGGGCGCGAATGGGAGGGTGACTGCCCCGAGCACGGCCCCCTCCAGATCGTCCCGGACACAGAGgTGGCGGCCGGCGtccccgagcgcgcgcggcacaCGGTACCGAGCTCCCTGGCGGTGCTGCAGAGCAAGATCCCGGACGCGGGACTCGGCGTCTGGGCCAAGGAGCCCATCCCCCGCCGGGTGCGCTTCGGCCCCTACGAGGGGGACATCACCACCAAGAGGGACACGGGCTACGGCTGGGAGATCCGCCGCGAGGGCAAGACGGTGCACTGCGTGGACGCTCTTGACGTCACCCACTCGAACTGGATGCGGTACGTGAACTGCGCTCGGCACGCCGGCGAGGAGAACCTGCACCCGTACCAGCACAAGGGCCGGCTGTACTACCGCACGGTGACCGACATCCCGGCGCACGCCGAGCTGCTCGTGTGGTACGGCGACTCGTACGCCAAGGACCTGGGCATCGACCCCAAGGCGCACCGGGAGGCGGCGGCCGACGCCCGCCCCTACAACGGAGCCTTCCGCTGCGAGCGGCAGTGCGGCCTCAGCTTCGTGagccccctgctgctggcccagcACCGGCGCGCAACCCGGTGTCACGCTGAGATCAGGCGCCGGCGAgcgtgcagcgcgcccgcggctgcgtccgcgaccggggcagaggggcgggtGGCCGCGGTGTCATCAGCGCCAGAGCTGCAGCCCGCCGACAGGCCCGTCGACAGGCCCGCCGACCGGAAGTGGAGCTGCGATGAGTGCGGAGCACGATTTGCTAAGACCTCGGATCTCAAGAGGCACATGCGGATCCACACGGGGGAGAAGCCCTTCAGCTGCAGCACCTGCGGGGCTGCGTTTTCTGACAGCTCCTATCTCCAGAGGCACATGCGCATCCACACGGGGGAGAAGCCCTTCAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCTATCTCCAGATGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCGAAGCTCCGTTCTCCAGACGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGTTCTCCAGAGGCACATGCGCATCCACACGGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCAAGACGCACATGCGCATCCACACTCGGGAGAAGCCCTTCAGCTGCAGCACCTGCGGGGCTGCGTTTGCTCAAAGCTCCGATCTCCGGAAGCACGAGCGCATCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGTGGGGCTGCGTTTGCTCAAAGCTCCAGTCTCAAGACGCACATGCGCTTCCACACTGGGGAGAAGCCCTACAGCTGCAGCACCTGCGGGGCTGCGTTTGTTACCAACGGCAACCTCCGGAAGCACGAGCGCATTCACACGGAAGACAAGCCCTACAGCTGCAGCACCTGA
- Protein Sequence
- MSGSSDESDYEDIREFFSVSDWQEMSNYEKSSYKSAKENFHAMQEAGLTPKPPQFMRNKPQPKVIKKTAVKRVKYQENDDDFDEKDLDWSPKKENQTAKCTRPSRAKAFVVPAKVKRPARGKENVAPSTPAAHPPEAQCRQAGPSRTASCEPTAAASVQGVQEPGPSGAARYPKRTGSRGKVYVEDPDLDDDDFLFCDDCGREWEGDCPEHGPLQIVPDTEVAAGVPERARHTVPSSLAVLQSKIPDAGLGVWAKEPIPRRVRFGPYEGDITTKRDTGYGWEIRREGKTVHCVDALDVTHSNWMRYVNCARHAGEENLHPYQHKGRLYYRTVTDIPAHAELLVWYGDSYAKDLGIDPKAHREAAADARPYNGAFRCERQCGLSFVSPLLLAQHRRATRCHAEIRRRRACSAPAAASATGAEGRVAAVSSAPELQPADRPVDRPADRKWSCDECGARFAKTSDLKRHMRIHTGEKPFSCSTCGAAFSDSSYLQRHMRIHTGEKPFSCSTCGAAFAQSSYLQMHMRIHTGEKPYSCSTCGAAFARSSVLQTHMRIHTGEKPYSCSTCGAAFAQSSVLQRHMRIHTGEKPYSCSTCGAAFAQSSDLKTHMRIHTREKPFSCSTCGAAFAQSSDLRKHERIHTGEKPYSCSTCGAAFAQSSSLKTHMRFHTGEKPYSCSTCGAAFVTNGNLRKHERIHTEDKPYSCST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732356; iTF_00732024; iTF_00732029;
- 90% Identity
- iTF_00732356; iTF_00732024; iTF_00732029;
- 80% Identity
- iTF_00732024;