Fcup025146.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:67505514-67508023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2 4.9e+02 2.4 0.1 2 12 17 27 16 30 0.89 2 13 0.17 26 6.4 0.6 1 23 323 346 323 346 0.92 3 13 0.17 25 6.4 4.2 1 23 355 377 355 377 0.98 4 13 0.00011 0.017 16.4 4.2 1 23 384 406 384 406 0.98 5 13 3e-07 4.5e-05 24.5 0.4 1 23 412 434 412 434 0.99 6 13 0.00011 0.017 16.4 1.2 1 23 441 463 441 463 0.97 7 13 2.3e-05 0.0034 18.6 0.4 1 23 469 491 469 491 0.97 8 13 6.4e-05 0.0097 17.1 0.3 1 23 497 519 497 519 0.98 9 13 6.9e-06 0.0011 20.2 0.3 1 23 525 548 525 548 0.95 10 13 0.00019 0.029 15.6 3.7 1 23 554 577 554 577 0.97 11 13 1.4e-05 0.0021 19.3 3.5 1 23 583 605 583 605 0.98 12 13 0.0003 0.045 15.1 0.4 1 23 611 633 611 633 0.96 13 13 0.00043 0.065 14.5 0.6 1 22 639 660 639 663 0.92
Sequence Information
- Coding Sequence
- ATGACGGCAATCATACAACGAATTGCAAATTACACGACAGAATGCCTAAAGTGTTTCCTTTGCGATCAAATCTTCAAAGACGGTGATGAACCGTGGCACTTGTTTGAGAAAAGGCTCCTCGAGAATGGTCAGCAAGACTGCCCACTAGCCACCATTCTCTCGTCTGCATTGGGGAAAGAACTTGAACAGGCCACAGTTCACACAAAGTTGCTTTGTGATGAATGCAATGTTATCGTTGTAGAATATGAACGTATCGAGAAAAGATACTATCAATTTCGGTTAAAGATTCTATCGGATTACAATAACACTGCGAAAGAGAATGGCTTGGATCCAGTGTTGTTTGAGATCGGAGACGTGGAGGAGGAATTTCCTCAGGTTCAGTCGAATGTTGCGGAGGAAAATGAGAGCTTGCTAAATGTGGAACAACCGAAAGTCAAAGACGAATTTCATGAGCAAATTGTTGACCAGATACCTGTTTTGGAGAACCAGGAAATTTCCAGTTATGTGGTCGCAGATGAACAGGagaatattgttgaagaattcACAGTAGAGGGAGTCGCTGCGATAAGTACCGACGATGCCCCGGAATCTGCAGATGGGGAAGACAGCAGGGCGTATGTTGAACGAAATATTCAAGTTATTGCCGAAGATATTTCTTACGAACAAATAATTGAGCAAAACTCTGTCATTAGTTTCGAGAACAGTGTGGACGCAGCCGAGTCGGTAATAGGATACACTAGCAGCAATGAAATTTCAGACGAAGCGCCAATTGTTCCTGATAATATTCCGCTTCAAAAGCAAAAACGAACAGTGCGTTCTATAAAACGCGAGCAACAAGGAGAATCCGAAGTAATTAACTTTGAATGCGCCAACAACCTATATATTTGTACCCTTTGTCCGGAGCAGAGCCTACATGAGCCAATGTCGTTCCCGAGCCATTTGAAAAACGTGCACAACTACAAATTCTACGTGTGTGACATCTGCTGTAGGGGTTTCAACAAACGTAACGAAATTAATGATCACATGGACGACGTGCACGGCGGCGGAGCGGAAGAAGGCGAGTTTCAATGTGAAACATGTCTACGGGTCTTCTTGAATCATCGCCAGTTTCGCATACACAAGCGATTGCACTACAGCTCAACGAAGCAGCATGAATGTTCGGAGTGCCACAAGAAGTACAGCTCAAAGAATCTCCTTGATGAGCACATGAATATGCACACAGGTAAACGGCCGTACAAATGTGGGATGTGTGGCAAGGATTTCGCCTCGAAATACACCCTTCAAGCTCATTTGAAGATACATACGAAGCGACCGAGACCATTTAGCTGCGATGAGTGCGACAAATCGTTCTTGAATCAGCAGAATCTAGTGCAGCACAAAAAGCTGCACTCGGGACTTAAATCGTACGTCTGTGAGATTTGTCAGAAGGCGTTTGGTACGCAGCACAATTTGGACGTGCACAAAATCGTGCATTCGGGCAATAAACCCTTCATTTGCCGAACGTGTGGCAAGGGATTTGCGCGGCGTGCCGAGATTAGAGATCACGAACGAACGCACACGGGCGAGAAACCCTTCCGGTGTGACATCTGCCCTATGGCATTCGCCCAGAGGTCAAACCTCATGACTCACAAGAAAGCGACGcatttaaatgataaaaaacaCAAGTGCACGCTTTGCGAAAGGTCGTTTAAGCGACGAAGGCTGTTGGAATACCACACCCAGTCTGCACACACGGGAGAGCGGCCGCACAAGTGTGATGTGTGCAGTGCTACATTCGTCTATCCGGAGCACTTCAAAAAGCATATGCGCATCCACAGCGGAGTAAAGCCATATGCATGTGAAGTTTGTGGAAAGTTATTCAACAGCAGGGACAATCGAAATGCACACAGGTTCATTCATAGCGAGAAAAAACCTTACGAGTGTTTGGAATGCGGAATGGGTTTCATGCGGAAACCTTTGCTGCTAGCTCACATGAAGCACACGAAGCATGTTAACGATACAATTATTGTTAATCAGCCGCAAATCAGTCACAAGGGGGTAGAAGATGTCGACAAGCAATTGACGGATGAGGAGTTGGAGCTGAATAGTCAAAATATATCTATTGCTGGCGAGGCGTCGTCTTACGATGAAGTTGCTACTTCTGACACGATACTCGTCGAAGATGGAGATGGGCAGTATATTAAGGATGAGGATGGCGAAGTGAAATATCTGCAGTTTACCGAGATGGACAAGGATGGACAGGCAACTTACTGGGTGGATATAGGCGAGGACAAAGAAGATGATAATTAG
- Protein Sequence
- MTAIIQRIANYTTECLKCFLCDQIFKDGDEPWHLFEKRLLENGQQDCPLATILSSALGKELEQATVHTKLLCDECNVIVVEYERIEKRYYQFRLKILSDYNNTAKENGLDPVLFEIGDVEEEFPQVQSNVAEENESLLNVEQPKVKDEFHEQIVDQIPVLENQEISSYVVADEQENIVEEFTVEGVAAISTDDAPESADGEDSRAYVERNIQVIAEDISYEQIIEQNSVISFENSVDAAESVIGYTSSNEISDEAPIVPDNIPLQKQKRTVRSIKREQQGESEVINFECANNLYICTLCPEQSLHEPMSFPSHLKNVHNYKFYVCDICCRGFNKRNEINDHMDDVHGGGAEEGEFQCETCLRVFLNHRQFRIHKRLHYSSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCGMCGKDFASKYTLQAHLKIHTKRPRPFSCDECDKSFLNQQNLVQHKKLHSGLKSYVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGEKPFRCDICPMAFAQRSNLMTHKKATHLNDKKHKCTLCERSFKRRRLLEYHTQSAHTGERPHKCDVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLAHMKHTKHVNDTIIVNQPQISHKGVEDVDKQLTDEELELNSQNISIAGEASSYDEVATSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATYWVDIGEDKEDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254230; iTF_00311245; iTF_00316203; iTF_00314576; iTF_00315385; iTF_00312026;
- 90% Identity
- -
- 80% Identity
- -