Basic Information

Insect: Cheilosia pagana
Gene Symbol: -
Assembly: GCA_936435595.1
Location: CAKZFE010000010.1:3105492-3108080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.98 88 4.1 0.3 1 12 16 27 16 29 0.91

2 13 0.00063 0.057 14.1 0.2 1 23 323 346 323 346 0.94

3 13 0.3 27 5.7 4.5 1 23 355 377 355 377 0.98

4 13 0.00012 0.011 16.4 4.2 1 23 384 406 384 406 0.98

5 13 7.2e-06 0.00064 20.3 0.9 1 23 412 434 412 434 0.99

6 13 8.7e-05 0.0079 16.8 1.1 1 23 441 463 441 463 0.97

7 13 2.5e-05 0.0022 18.6 0.4 1 23 469 491 469 491 0.97

8 13 7e-05 0.0063 17.2 0.3 1 23 497 519 497 519 0.98

9 13 7.6e-06 0.00068 20.2 0.3 1 23 525 548 525 548 0.95

10 13 0.00021 0.019 15.6 3.7 1 23 554 577 554 577 0.97

11 13 1.4e-05 0.0013 19.3 3.5 1 23 583 605 583 605 0.98

12 13 0.00032 0.029 15.1 0.4 1 23 611 633 611 633 0.96

13 13 0.00094 0.084 13.6 0.8 1 22 639 660 639 663 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.98	88	4.1	0.3	1	12	16	27	16	29	0.91
2	13	0.00063	0.057	14.1	0.2	1	23	323	346	323	346	0.94
3	13	0.3	27	5.7	4.5	1	23	355	377	355	377	0.98
4	13	0.00012	0.011	16.4	4.2	1	23	384	406	384	406	0.98
5	13	7.2e-06	0.00064	20.3	0.9	1	23	412	434	412	434	0.99
6	13	8.7e-05	0.0079	16.8	1.1	1	23	441	463	441	463	0.97
7	13	2.5e-05	0.0022	18.6	0.4	1	23	469	491	469	491	0.97
8	13	7e-05	0.0063	17.2	0.3	1	23	497	519	497	519	0.98
9	13	7.6e-06	0.00068	20.2	0.3	1	23	525	548	525	548	0.95
10	13	0.00021	0.019	15.6	3.7	1	23	554	577	554	577	0.97
11	13	1.4e-05	0.0013	19.3	3.5	1	23	583	605	583	605	0.98
12	13	0.00032	0.029	15.1	0.4	1	23	611	633	611	633	0.96
13	13	0.00094	0.084	13.6	0.8	1	22	639	660	639	663	0.92

Sequence Information

Coding Sequence: ATGACGGAAATCATTAGCCAAATATCAAACTATACGACAGAACTTTTCAAGTGTTTCCTTTGCGATCGAATATTCGCAGATGGCGACGAACCATGGCATTTGTTCGAGAAGAGGCTGCTCGAAAACGGCCAGCAAGATTGCCCGCTGGCTGTGATTTTGTCATCTGCATTGGGAAAGGAAATCGAACAGGATAATGTCCACTCTAAGTTGCTTTGCGATGAGTGCAACTTGATACTTGTAGAGTATGAGAGTGTGGAGAAGAGATTCTATCAGTTTCGATTGAAAATTCTGTCCGACTACAATAATACGGCCAAAGAGAATGGACTCGATCCGGTTTGGTTCGAGATAGGCGAAGTGGAGGATAGCGCTAATACTGATTCGCAGCTGGTTGAAAGCGAGAGTCCGCTGAATGTGCAGCAAGTCAAAATCGAACGCGACATGGAAGAGAGTGTGGCTATTCCTATGTTGGTTCATCAGGAAATCGATAGTTTTGTCGTGGAGGATGTTCAAGGGCAGTTCCAAGACGGTATTGTTCCCGAGTTTGTCACAGAAGCAGTGGCTGTAATTAATACCGATGTTCAGGATGGCGAGGAATTGGAGGATGCTACCAGCAGCGCATATCCTGAGCGAAACTTACAAATTATGGGAGAAGAGATAACCTACGAGCAGATAATCGAACAGAACTCCGTCATCAGCTATGACAACAGCGTGGATGCTGCCGAGTCCGTAATAGGTTACAACAGCAGCAACGACGTTTCAGATGAATGTCCCATACTGCCCGACGACAATCCGAAGCCGCAAAAGCAAAAACGCCCATCACGTACAATCAAACGAGAACCGGAAACAGAGCCCATTGACTTTGAATTGGTCGACAACATGTACATCTGTGCCCTGTGTCCAGATAAAAGCGAACACGAGCCGATAGTGTTCCCGAATCACTTGAAAACCGTTCACAACTACAAGTTCTACGTATGCGACATGTGCAACAAGGGTTTtaacaaacgaaacgaaatcaaTGACCACATGGACGAGGCGCACGGTGGCGGAGCAGAAGAAGGCGAGTTTCAGTGTGAAACGTGTCTTCGGGTGTTTCTGAATCACCGCCTGTTTCGTAACCACAAGCGGCTGCACTACATTTCGACAAAGCAACACGAATGCTCCGAGTGCCACAAGAAGTACAGCTCGAAAAATCTGCTCGACGAGCACATGAACATGCACACCGGCAAGCGTCCCTACAAGTGTGTGTCGTGCAGCAAGGACTTCGCCTCGAAGTACACACTGCAGGCGCACATGAAGATCCATACGAAGCGACCAAGGCCGTACAGTTGCGACGAGTGCGACAAGTCGTTCCTGAACCAACAGAACCTGGTGCAGCACAAAAAGTTGCACTCAGGACTCAAGTCGTATGTGTGTGAGATTTGTCAGAAGGCGTTTGGTACGCAGCACAACCTGGACGTGCACAAGATTGTTCACTCGGGCAATAAGCCGTTCATCTGCCGGACGTGTGGTAAGGGCTTTGCTCGTCGGGCTGAGATACGAGATCACGAGCGCACGCACACCGGCGAGAGGCCGTTCCGCTGTGACATTTGCCCGATGGCGTTCGCGCAGCGGTCAAACCTAATGACGCACAAGAAAGCCACTCATCTGAATGACAAGAAGCACAAGTGCACGCTGTGCGAACGGTCGTTCAAGCGACGGAGACTGCTGGAGTATCACACTCAGTCGGCGCACACCGGCGAACGACCGCACAAGTGCGAGGTGTGCAGCGCCACGTTTGTCTATCCGGAGCACTTTAAGAAGCATATGCGGATTCACAGCGGAGTCAAACCGTACGCGTGCGAGGTCTGCGGCAAGCTGTTCAACAGCAGAGACAACCGAAACGCGCACAGGTTCATCCACAGCGAGAAGAAGCCCTACGAGTGTTTGCAATGCGGCATGGGCTTCATGCGGAAGCCGCTGCTGCTGGCGCACATGAAACACACCAAGCATGTCAACGACACCATCATTGTGAATCAGCCGCAAATCAGTCACAAGGGCGTTGAGGAAGTCGAAAATGAGCTGACAGACGAGGATCTGGAGTTGAACAGTCGAAGTATGTCGATTGTGGACAGAGAATCGTTCGACGAGGTGGCTACCTCCGACACGATACTAGTGGAAGATGGCGACGGGCAGTACATCAAGGACGAGGATGGCGAGGTCAAATACCTGCAATTCACCGAGATGGACAAGGACGGACAGGCGACGTATTGGGTGGACATCGGCGAAGACAAGGAGGACGATAATTAG
Protein Sequence: MTEIISQISNYTTELFKCFLCDRIFADGDEPWHLFEKRLLENGQQDCPLAVILSSALGKEIEQDNVHSKLLCDECNLILVEYESVEKRFYQFRLKILSDYNNTAKENGLDPVWFEIGEVEDSANTDSQLVESESPLNVQQVKIERDMEESVAIPMLVHQEIDSFVVEDVQGQFQDGIVPEFVTEAVAVINTDVQDGEELEDATSSAYPERNLQIMGEEITYEQIIEQNSVISYDNSVDAAESVIGYNSSNDVSDECPILPDDNPKPQKQKRPSRTIKREPETEPIDFELVDNMYICALCPDKSEHEPIVFPNHLKTVHNYKFYVCDMCNKGFNKRNEINDHMDEAHGGGAEEGEFQCETCLRVFLNHRLFRNHKRLHYISTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCVSCSKDFASKYTLQAHMKIHTKRPRPYSCDECDKSFLNQQNLVQHKKLHSGLKSYVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFRCDICPMAFAQRSNLMTHKKATHLNDKKHKCTLCERSFKRRRLLEYHTQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLQCGMGFMRKPLLLAHMKHTKHVNDTIIVNQPQISHKGVEEVENELTDEDLELNSRSMSIVDRESFDEVATSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATYWVDIGEDKEDDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00724974;
90% Identity: iTF_00316203;
80% Identity: -