Basic Information

Gene Symbol
stc
Assembly
GCA_946478135.1
Location
CAMLCK010000047.1:1905192-1920637[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.9e+04 -4.4 1.6 15 19 573 577 572 577 0.81
2 14 0.13 1.9e+03 -0.3 0.6 4 10 606 612 605 612 0.93
3 14 4e-05 0.58 10.9 18.1 4 19 620 635 618 635 0.93
4 14 0.0008 12 6.7 6.4 1 18 671 688 671 689 0.89
5 14 5.5e-05 0.8 10.5 11.8 1 18 730 747 730 748 0.98
6 14 4.4e-07 0.0064 17.2 11.3 1 19 789 811 789 811 0.88
7 14 2 2.9e+04 -5.4 2.2 6 10 841 845 841 845 0.94
8 14 0.012 1.7e+02 3.0 7.2 1 12 851 862 851 862 0.93
9 14 0.27 3.9e+03 -1.3 0.9 4 10 866 872 865 872 0.89
10 14 7.9e-09 0.00012 22.7 15.8 1 19 878 896 878 896 0.99
11 14 1.2 1.7e+04 -3.4 1.1 11 15 925 929 924 931 0.63
12 14 0.00072 10 6.9 9.7 10 18 943 951 940 952 0.92
13 14 1.6e-07 0.0023 18.6 13.8 1 17 988 1006 988 1012 0.83
14 14 0.0022 32 5.3 4.8 1 12 1018 1028 1018 1029 0.96

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACTCATACGCATATAACAACCAGTATCAACAAGGCTCTAATGGCTGGAACGGCGATCCTGGTAACCAATACATGAATCAAGCTTATTACAACAGGCCAGATGCCAATGGTCAATATGTGAGTTTTAATGAATTTCTAAATCAGATGCAAAACAGCAATACTGCTTCTCAGACTAACAATCAATTACCTAACTCCTTCAGCAATATTCAATATGATAACTATTCCTCTGGTCAATATAACTACATGCCTTCTTCATCCCAGACACAGCTCAACAATATGAACTATGGGACTCCAGGTATGTCCAATGAAGCCAGCCCCTACCCACAGAACCAGTTCAGTGCCCCACCACCAGAAACAACTTACTCTAACAATGCCACATTCAAATCTACCCTTACAGCCACTGCTTTAGAATTTGTTCCTAAAGGTTCTCTTCCAAGACCATCTAGTAGCCAGAACATTCCAGACTCTTCCAGTAGTTCCAAGGATTTGAGTGATGGTGCTAATGAAGCCTTATCTAACTATGGTAGCTCATCTGACCGCAACTGGAGGCAGAGGCCACAAAAATCCAGTGAACCAAAAGACAAACCATTGGCGAATGGCTATCAAGAAAGCTCGAAAGGTTATGGGCGCAACCGTGATACTTCACAACGAAACAATGAAAGTAATGGTAGACATAATAGAAATGAAGATACCAGTACAGAAGTAAGCAGTCATAGCAATGATTCTAGCAGAAATCAGGAAACAAATCAACAAAGCTATGAATCAAACAATGTGAGTCGAGAACCACGACAAAGAAACTATGATTCCAACAACAGAAATCAAGAACCACGTTCAAATAGAAATCAAGAACCTAGAAATAGAAGTTATATTGATAGAAACATGGATACAAGGAAAAGCAATGACTCCAATAGTAGAAACAGAGATTCTACAAGTTACGATTCTAATGACAGGGGCCAAGAATCTAGGGAGTTAGATTCAAATCGCTATGACTCTCGGAATGAACGCCGTAACCAATCAAAGGGTAACCCAAAAAATAAAGCTAAAGATGATAGAACTTTCTACAATAGTGGTATAAGTAAAGATGGTCAAGATGTCAGGAGTAGTCGTGGAGAAAACTCTGGAAGGACTGATGATCGAAACCGAGATAGTGATGGCTGGCCAGATAGTGCTAGGGATAATTATAGACGAGGGGAGGCATCCAGGGGTGATAGCTATGGCTCTAGAGATAATTACGGAAGGGCAGAAGGTTCTGGGCGTTTGCCAAGAAACTGGGCTGGTACCCAGCGACCACGAGGGGACCGGAGGGAAGACGATGAACAATATGCTAATAGCTACAGTCAGAAAGAAGAACGAGAAAGGCGAGAATATGAGAGAACAGAAAGAGCATATGACAGGGGAGAAAGGGACAAGGGATATGATAGAGACAGGGGATTTGATAGGCAAGACAGAGATAagcagaaaaatatatttagtaaTCCTAAATTTAAAGGCAAGCAACAGATTGACTTTGCTAACAAAGAGATGACTCAACGTGAACGTCTCACAGACCAGCTAGATAAAGGAACTCTTGAGTGCCTTGTGTGCTGTGATAGAGTGAGACTGACAGATCCTGTGTGGTCCTGCTCTAACTGTTACCATGTGCTTCATTTAAAATGCATCAGGAAATGGGCTATGAGCAGTGTAATTGAGGGAAAATGGCGTTGCCCCGCCTGTCAGAACATTAGCAAGAAGATCCCCACAGAATACCGCTGTATGTGCGGTGCGATGCGCTCACCTGAATATCAGCGAGGCAGCGCAGCTCATACCTGCGGCAAGGCGTGTAAGCGAGAACGGACCTGCCCGCATCCTTGCACGCTGCTCTGCCATCCGGGACCCTGCCCGCCGTGCCAGGCCACTGTTAGCAAACAATGCGGTTGTGGCGCCGAAACCCGTTCTGTAATGTGCAGCAGTAAACTACCGCAAGTCTGCGGCCGCACCTGCAACCGCACTCTCCCTTGCAACGTGCACCAGTGCGCCGCACTCTGCCACGAGGAAGCCTGCGCTCTCTGCGACAAGACTGTCACGCAAGTATGCTACTGCCCAGCGGCCACGGAACGCACGGTCCCGTGCACTCGCGAAAACGGCTGTAAGACGCAGTGGGAGTGCGAGCGTGCGTGTGGACGCATACTGGCGTGCGGCGCGCACGTGTGCCGTGCCCCGTGCCACGCGCCGCCGTGCCAGTCGTGCGCGCTGCTGCCGCAAGCCGTCCCTACGTGCCCGTGCGGGAAGATGCAACTAGACAAGAACGCACGCCAAACCTGCTCCGACCCGATCCCTCTCTGCGGAAACATCTGCGCCAAGCCGCTGCCTTGCGGGCCCACAAACGACAAACACTTCTGCAAGCTGGTCTGCCATGAAGGCCCCTGTCCAGTCTGCCCCGACACCACCTTGGTGCAATGTCGCTGTGGACACTCCAGCCGTGAGGTTCCTTGCGCTGAACTGGCTGAAATGCTAAACAATGTGCTGTGTCAGAAGAAATGTAACAAGAAGCTGTCGTGCGGCCGCCACCGCTGCCGCACCGCATGCTGCGACTCGACGTCGCACCGCTGCAGCGTGTCGTGCGCGCGCTCGCTGCCGTGCGGCCTGCATCGCTGCGAGGAGTTCTGCCACACCGGGCACTGTCCGCCGTGTCCGCGCGTCAGTTTCGACGAGCTCCGGTGCGAGTGCGGCGCGTCAGTGCTGATGCCGCCCGTGCCGTGCGGGGCCCGCGCGCCCCCCTGCGAGGGGCCCTGCACCCGCCCCCGCGCCTGCACCCACCCCCCGCATCACTCCTGCCACTCTGGGGAGTGTCCACCCTGTGTGGTGCTCACTACCAAGAGATGCTATGGCGGACACGAGGAGAGGAAGACCATACCGTGTTCGTTAGAAGAGTTCTCATGCGGTCTGCCGTGCGGAAAGCCGCTGCCTTGTGGAAAGCACAACTGCATCAAGACATGCCATAAAGGCCCTTGCGACGCTGGCAAATGCACCCAGCCGTGCACTGAGAAGCGTCCCACTTGCGGGCACCCGTGCAACGCAGCCTGTCACTCATCAGCGGCCGAGGGCAGTGCCGGCGCCGCGTGTCCGTCGAGCGCGCCCTGCCGCGCCGCCGTGCGCGCCGCCTGCCCGTgcggccgccgcgccgcgccgcgctccTGCCACGACAACGCCAAGGACCTGGCGCGAATCATGAGTGCCCTAGCCGCGACCAAGATGCAAGAAGGCGGCGCCATCGAGATCACGGAACAGCGTCCAGCACAGATGCTCAAAACCCTGGAATGCGACGACGAGTGCCGAGTCGAAGCCCGCACTCGCCAGATGGCGCTGGCACTACAGATCCGCAACCCGGACGTCTCCGCCAAACTTGCACCACGCTACAGCGAACACCTCCGCACCACTGCGCAGAGGGAGCCGTCCTTCGCGCAGCAGATACACGACAAACTGACCGACCTTGTGCAACTCGCTAAGAAGTCTAAACAGAAGACGCGCGCTCATTCCTTCCCATCAATGAACTGGCAGAAGCGTCAGTTCATACACGAACTGTGCGAACATTTCGGCTGCGAGAGTGTAGCCTACGACGCTGAGCCTAACCGGAACGTCGTCGCTACGGCTGATAAGGAAAAATCATGGCTGCCCGCAATGAGCGTGTTGGAAGTCCTGGGTCGCGAGGCAGGCAAGCGCCGCGTGCCGGGGCCCGTGCTGCGCGCGCCGCCGCagaccgccgccgccgcgccctcTGCGACCAAATCCGCTAGTGGCTGGGCCACCCTCACCTCATCGAAATCCACCAACGCCTGGGCCGCCCGCAGCCAAACTCAAGTCAAACCCGAACAAAAACCGGAAACCAAACCAGAACCCAAGATTGACTACTTCGATAACCCACCGGATAACTGA
Protein Sequence
MSQWNNSYAYNNQYQQGSNGWNGDPGNQYMNQAYYNRPDANGQYVSFNEFLNQMQNSNTASQTNNQLPNSFSNIQYDNYSSGQYNYMPSSSQTQLNNMNYGTPGMSNEASPYPQNQFSAPPPETTYSNNATFKSTLTATALEFVPKGSLPRPSSSQNIPDSSSSSKDLSDGANEALSNYGSSSDRNWRQRPQKSSEPKDKPLANGYQESSKGYGRNRDTSQRNNESNGRHNRNEDTSTEVSSHSNDSSRNQETNQQSYESNNVSREPRQRNYDSNNRNQEPRSNRNQEPRNRSYIDRNMDTRKSNDSNSRNRDSTSYDSNDRGQESRELDSNRYDSRNERRNQSKGNPKNKAKDDRTFYNSGISKDGQDVRSSRGENSGRTDDRNRDSDGWPDSARDNYRRGEASRGDSYGSRDNYGRAEGSGRLPRNWAGTQRPRGDRREDDEQYANSYSQKEERERREYERTERAYDRGERDKGYDRDRGFDRQDRDKQKNIFSNPKFKGKQQIDFANKEMTQRERLTDQLDKGTLECLVCCDRVRLTDPVWSCSNCYHVLHLKCIRKWAMSSVIEGKWRCPACQNISKKIPTEYRCMCGAMRSPEYQRGSAAHTCGKACKRERTCPHPCTLLCHPGPCPPCQATVSKQCGCGAETRSVMCSSKLPQVCGRTCNRTLPCNVHQCAALCHEEACALCDKTVTQVCYCPAATERTVPCTRENGCKTQWECERACGRILACGAHVCRAPCHAPPCQSCALLPQAVPTCPCGKMQLDKNARQTCSDPIPLCGNICAKPLPCGPTNDKHFCKLVCHEGPCPVCPDTTLVQCRCGHSSREVPCAELAEMLNNVLCQKKCNKKLSCGRHRCRTACCDSTSHRCSVSCARSLPCGLHRCEEFCHTGHCPPCPRVSFDELRCECGASVLMPPVPCGARAPPCEGPCTRPRACTHPPHHSCHSGECPPCVVLTTKRCYGGHEERKTIPCSLEEFSCGLPCGKPLPCGKHNCIKTCHKGPCDAGKCTQPCTEKRPTCGHPCNAACHSSAAEGSAGAACPSSAPCRAAVRAACPCGRRAAPRSCHDNAKDLARIMSALAATKMQEGGAIEITEQRPAQMLKTLECDDECRVEARTRQMALALQIRNPDVSAKLAPRYSEHLRTTAQREPSFAQQIHDKLTDLVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLGREAGKRRVPGPVLRAPPQTAAAAPSATKSASGWATLTSSKSTNAWAARSQTQVKPEQKPETKPEPKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2