Basic Information

Gene Symbol
stc
Assembly
GCA_947086465.1
Location
OX352235.1:11045929-11058939[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.2e+04 -4.4 1.6 15 19 569 573 568 573 0.81
2 14 0.11 1.2e+03 -0.1 0.5 4 10 602 608 601 608 0.93
3 14 4e-05 0.43 10.9 18.1 4 19 616 631 614 631 0.93
4 14 0.00037 4.1 7.8 6.2 1 18 667 684 667 685 0.90
5 14 2.5e-05 0.28 11.5 13.0 1 18 726 743 726 744 0.98
6 14 7.8e-07 0.0085 16.4 11.1 1 19 785 807 785 807 0.88
7 14 2 2.2e+04 -5.4 2.2 6 10 837 841 837 841 0.94
8 14 0.012 1.3e+02 3.0 7.2 1 12 847 858 847 858 0.93
9 14 0.27 2.9e+03 -1.3 0.9 4 10 862 868 861 868 0.89
10 14 7.9e-09 8.6e-05 22.7 15.8 1 19 874 892 874 892 0.99
11 14 1.2 1.3e+04 -3.4 1.1 11 15 921 925 920 927 0.63
12 14 0.00072 7.8 6.9 9.7 10 18 939 947 936 948 0.92
13 14 1.6e-07 0.0017 18.6 13.8 1 17 984 1002 984 1008 0.83
14 14 0.00068 7.4 7.0 5.1 1 12 1014 1024 1014 1025 0.96

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACTCATACGCATATAACAACCAGTATCAACAAGGCGCTAATGGCTGGAACGGCGACCCTGGTAACCAATACATGAATCAAGCTTATTACAACAGGCCAGATGCCAACGGTCAATATGTGAGTTTTAATGAATTTCTAAATCAGATGCAAAACAGTAATACTGCTCCTCAGACTAACAATAAATTACCTAACTCCTTCAGCAATAGTCAATATGATAACTATTCCTCTGGTCAATATAACTACATGCCTTCTTCATCCCAGACACAGCTCAACAATATGAACTATGGTACTCCAGGCATGTCCAATGAAGCCGGCCCCTACCCACAGAACCAGTTCAGTGCCCCACCTCCAGAATCAACTTACTCTAACAATGCCACATTCAAATCTAACCTTACAGCAACTGCATTAGAATTTGTTCCTAAAGGTTCTCTTGCAAGACCATCTAGTAGCCAGAACATTCCAGAGTCTTCCAATAGTTCCATGGATGTGAGTGATGGTGTTAGTGAAGCCCAATCTAACTACGGTAGGTCATCAGATCGCAACTGGAGGCAGAGGCCACAAAAACCCAGTGAACCAAAAGACAAATCATTGGCGAATGGCTATCAAGAAAACTCGAAAGGTCATGGACGCAACCATGATACTTCACAACGAAACAACGAAAGTAATGGTAGACATAATAGAAATGAAGATACCAGTACAGAAGTAAGCAGTCATAGCAATGAATCTAATAGCAGAAACCAAGAAACAAATCAACAAAGCTATGAATTAAACAATGTGAGTCGAGAACCACGACAAAGAAACCATGATTCCAACAACAGAAATCAAGAACCACGTTCAAATAGAAATCCAGAACCTAGGAATAGAAATCATAATGATAGAAACCAAGATACTAGGAAAAACAATGACTCCAATAGTAGAAACAGAGATTCTACAAATTATAATTCTAATGATAGAAGCCAAGAATCAAGGGAGTTAGATTCAAATCGCTATGACTCTCGTCGTAACCAATCAAAGGGTAACCCTAAAAATAAAGCTAAAGATGATAGAACTTTCTACAATAGTGGTATAAGTAAAGATGGTCAAGATGTCAGGAGTGGTCGTGTAGAAAACTCTGGAAGAACTGATGATCGAAACCGAGACAATGATGGCTGGCCAGATAGTGCACCTAGGGATGGTTATAGACGAGGGGAGGCTTCCAGGGGTGATAATTATGGCTCTAGAGATAATTATGGAAGGGCAGAAGGTTCTGGACGTTTGCCAAGAAACTGGGCTGGTACCCAGCGACCACGAGGGGACCGGAGGGAAGACGATGAACAATATGCTTATAGCTACAGTCAGAAAGAGGAACGAGAATATGAGAGAACAGAAAGAGCATATGACAGGGGAGAAAGGGACAAGGGATATGATAGAGAAAGGGGATTCAATAGGCAAGACAGAGATAAGCAGAAAAATATATTTAGTGCTCCTAAATTTAAAGGCAAGCAACAGGTTGACTTTGCTAACAAAGAGATGACTCAACGTGAACGTCTCACAGACCAACTAGATAAAGGAACTCTTGAGTGCCTTGTGTGCTGCGATAGAGTGAGACTGACAGATCCTGTGTGGTCCTGCTCTAACTGTTATCATGTGCTTCATCTAAAATGTATCAGGAAATGGGCTATGAGTAGTGTAATTGAAGGCAAATGGCGTTGCCCCGCCTGTCAGAACGTTAGCAAGAAAATCCCCACAGAATACCGCTGTATGTGCGGTGCGATGCGCTCACCTGAATATCAGCGAGGTAGCGCAGCTCATACCTGCGGCAGGGCGTGTAAGCGAGAACGGACCTGCCCGCATCCTTGCACGCTGCTCTGCCATCCGGGACCCTGCCCGCCGTGCCAGGCCACTGTTAGCAAACATTGCGGTTGTGGCGCCGAGACACGTTCCGTAATGTGCAGCAGTAAACTACCGCAAGTCTGCGGCCGCACCTGCAGCCGCACTCTCCCTTGCAACGTGCATCAGTGTGCCGCACTCTGCCACGAAGAAGCCTGCGCTATCTGCGACAAGACTGTCACGCAAGTATGCTACTGCCCAGCGGCCACGGAACGCACGGTCCCGTGCACTCGCGAAAACAGCTGCAAGGCGCAGTGGGAGTGCGAGCGTGCGTGCGGACGCATACTGGCGTGCGGCGCGCATGTGTGCCGTGCCCCGTGCCACGCGCCGCCGTGCCAGCCGTGCGCGCTACTGCCGCAAGCCGTGCCTACGTGCCCGTGCGGGAAAATGCAACTAGACACGAACGCACGCCAAACCTGCTCCGACCCGATCCCTCTCTGCGGAAACATCTGTGCCAAGCCGTTGCCTTGCGGGCCCACAAACGACAAACACTTCTGCAAGCTGATTTGCCATGAAGGCCCCTGTCCAGTCTGCCCCGACACCACCTTGGTGCAATGTCGCTGTGGACACTCGAGCCGTGAAATCCCCTGCGCTGAACTGGATGAAATGATAAACAATGTGCTATGTCAGAAGAAATGTAACAAGAAACTGTCGTGCGGCCGCCACCGCTGCCGCACCGCATGCTGCGACGCGACGTCGCACCGTTGCAGCGTGTCGTGTGCGCGCTCGCTGCCGTGCGGCCTGCATCGCTGCGAGGAGTTCTGCCACACCGGGCACTGTCCGCCGTGTCCGCGCGTCAGTTTCGACGAGCTCCGGTGCGAGTGCGGCTCGTCAGTGCTGATGCCGCCCGTGCCGTGTGGGGCCCGCGCGCCCCCCTGCGAGGGGCCCTGCACCCGCCCCCGCGCCTGCACCCATCCCCCGCACCACTCTTGTCACTCCGGGGAGTGTCCGCCCTGTGTGGTGCTCACTACCAAGAGATGCTATGGTGGACACGAGGAGAGGAAGACAATACCGTGTTCGTTAGAAGAGTTTTCGTGCGGTCTGCCGTGCGGAAAGCCGCTGCCTTGTGGAAAGCACAACTGCATCAAGACATGCCATAAAGGACCTTGCGACGCTGGCAAATGCACCCAGCCGTGCACTGAGAAGCGTCCCACCTGCGGGCACCCTTGCAACGCACCCTGTCACTCATCAGCGGCCGAGGGCAGTGCCGGCGCCGCGTGTCCGTCGAGCGCGCCCTGCCGCGCCGCCGTGCGCGCCGCCTGCCCGTGCGGCCGCCGTGCCGCGCCGCGCTCCTGCCACGACAACGCCAAGGACCTAGCGCGAATCATGAGTGCTCTAGCTGCGACCAAGATGCAAGAAGGCGGCGCCATCGAGATCACAGAACAGCGTCCAGCACAGATGCTCAAAACCCTGGAATGCGACGACGAGTGCCGAGTCGAAGCCCGCACACGCCAGATGGCGCTAGCACTACAGATCCGCAACCCGGACGTCTCCGCCAAACTTGCACCCCGCTACAGCGAACACCTCCGCACCACTGCGCAGAGAGAGCCGTCCTTCGCGCAGCAGATACACGACAAACTGACCGACCTTGTGCAACTCGCTAAGAAGTCCAAACAGAAGACGCGCGCGCATTCGTTCCCATCAATGAACTGGCAGAAGCGTCAGTTTATACACGAATTGTGCGAACATTTCGGCTGCGAGAGTGTAGCCTACGACGCCGAGCCTAACAGGAACGTCGTCGCTACGGCTGATAAGGAGAAATCATGGCTGCCTGCAATGAGCGTGTTGGAAGTCCTGGGTCGCGAGGCAGGGAAGCGCCGCGTGCCGGGGCCCGTGCTGCGCGCGCCGCCGCAGACCGCCGCCGCCGCGCCCTCTGCCGCCAAATCCGCAAGTGGCTGGGCCACCCTCACCTCATCGAAATCCACCAACGCCTGGGCCGCCCGCAGCCATACTCAACTCAAACCTGAACCAAAACCGGAACCCAAACCAGAACCCAAGATTGACTACTTCGATAACCCACCGGATAACTGA
Protein Sequence
MSQWNNSYAYNNQYQQGANGWNGDPGNQYMNQAYYNRPDANGQYVSFNEFLNQMQNSNTAPQTNNKLPNSFSNSQYDNYSSGQYNYMPSSSQTQLNNMNYGTPGMSNEAGPYPQNQFSAPPPESTYSNNATFKSNLTATALEFVPKGSLARPSSSQNIPESSNSSMDVSDGVSEAQSNYGRSSDRNWRQRPQKPSEPKDKSLANGYQENSKGHGRNHDTSQRNNESNGRHNRNEDTSTEVSSHSNESNSRNQETNQQSYELNNVSREPRQRNHDSNNRNQEPRSNRNPEPRNRNHNDRNQDTRKNNDSNSRNRDSTNYNSNDRSQESRELDSNRYDSRRNQSKGNPKNKAKDDRTFYNSGISKDGQDVRSGRVENSGRTDDRNRDNDGWPDSAPRDGYRRGEASRGDNYGSRDNYGRAEGSGRLPRNWAGTQRPRGDRREDDEQYAYSYSQKEEREYERTERAYDRGERDKGYDRERGFNRQDRDKQKNIFSAPKFKGKQQVDFANKEMTQRERLTDQLDKGTLECLVCCDRVRLTDPVWSCSNCYHVLHLKCIRKWAMSSVIEGKWRCPACQNVSKKIPTEYRCMCGAMRSPEYQRGSAAHTCGRACKRERTCPHPCTLLCHPGPCPPCQATVSKHCGCGAETRSVMCSSKLPQVCGRTCSRTLPCNVHQCAALCHEEACAICDKTVTQVCYCPAATERTVPCTRENSCKAQWECERACGRILACGAHVCRAPCHAPPCQPCALLPQAVPTCPCGKMQLDTNARQTCSDPIPLCGNICAKPLPCGPTNDKHFCKLICHEGPCPVCPDTTLVQCRCGHSSREIPCAELDEMINNVLCQKKCNKKLSCGRHRCRTACCDATSHRCSVSCARSLPCGLHRCEEFCHTGHCPPCPRVSFDELRCECGSSVLMPPVPCGARAPPCEGPCTRPRACTHPPHHSCHSGECPPCVVLTTKRCYGGHEERKTIPCSLEEFSCGLPCGKPLPCGKHNCIKTCHKGPCDAGKCTQPCTEKRPTCGHPCNAPCHSSAAEGSAGAACPSSAPCRAAVRAACPCGRRAAPRSCHDNAKDLARIMSALAATKMQEGGAIEITEQRPAQMLKTLECDDECRVEARTRQMALALQIRNPDVSAKLAPRYSEHLRTTAQREPSFAQQIHDKLTDLVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLGREAGKRRVPGPVLRAPPQTAAAAPSAAKSASGWATLTSSKSTNAWAARSHTQLKPEPKPEPKPEPKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00700681;
90% Identity
iTF_00706625;
80% Identity
-