Etri028404.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041625.1:2001842-2012253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.056 4.7 8.7 2.7 1 23 252 275 252 275 0.95 2 16 8.4e-05 0.0071 17.6 1.0 1 23 284 307 284 307 0.96 3 16 0.075 6.3 8.3 0.5 2 23 320 342 320 342 0.96 4 16 0.00034 0.029 15.7 1.6 2 23 352 374 351 374 0.96 5 16 0.00015 0.013 16.8 1.7 2 23 387 409 386 409 0.96 6 16 8e-07 6.8e-05 24.0 0.5 1 23 437 460 437 460 0.97 7 16 3.3e-05 0.0028 18.9 1.2 2 23 470 492 469 492 0.96 8 16 0.16 13 7.3 1.4 2 19 497 514 496 517 0.90 9 16 0.00093 0.079 14.3 0.8 2 21 522 541 521 544 0.94 10 16 0.004 0.34 12.3 0.5 3 23 554 575 553 575 0.97 11 16 3.9e-05 0.0033 18.7 2.9 1 23 580 603 580 603 0.95 12 16 0.0036 0.31 12.5 4.0 1 23 614 637 614 637 0.93 13 16 5.2 4.4e+02 2.5 0.8 1 23 659 682 659 682 0.85 14 16 0.32 27 6.4 1.5 2 23 715 736 714 736 0.97 15 16 0.0055 0.47 11.9 0.2 1 23 802 824 802 824 0.97 16 16 0.25 21 6.7 2.0 1 23 830 853 830 853 0.96
Sequence Information
- Coding Sequence
- atgGAGAGTGGACGTGTTGGGACTGAGGCCCCCAGCACAAACACGTCTGCCAGTGCTGATGGGTCAGCATCGCCATTATTCGTCGACTGCGACCAGGTGGAAGAAAATGAGCAGTCTTGGGCAGAGGAGGGCGACCATATGGTGGAGTCTGAGGGCAACTCTATGCTGGATACAGACCGAGCAATTTTCATCCTGTACGGAGTACAAGGGGCTGAAAAACTGTCCATCCACATGCAACCATTGATCACCCCTGAATGTAACTTAACTAAATCTGAACCAATAATGTCACTGTCGTTACTaacagaaaaagaaataaaggtTGAAGATGACCGTAAAGACCCCACCTCTTTCCTTCCCCAAGAGGAAATGTCCTATGAGatcaaaaagaagaagaaaaagaaaaaaaagaagaaacaagAGGATCCATTCAAAGATCTTGAAGGACCACTGACCATGATACGAGAACCGGATATAACGGCTTTGGATCCGGATATTGGGAGCTTGGATCCAGAAGTTACAATCAAGGTTGAGGATATTGAAGTGGCTCTTGATATTAATGATTTCGACAACGACGACGGTTTTGTTGAAGAAGGTTACTCCGAAAACGCCCAATTACAACCAGCAGTCAAGCTCGAAGACCAGAACAGAGATCACGTCCTCCTTACCTTCCAGAACATCATCAGCGACAACTTAATCTCAGACAAACTCCTGAAAACTGAAAAGATGTCGCCACCACATGATTCCGGTGAAAATCACTTCTGTCAAGTTTGTCATCTTGCGTTCGGATCTGCCAGAACACTAGACGCACACAGAAAACGATCGCATAAGAAATTCAGACAATCTTTTGTACATATATGCAACGATTGTGGCATGTCATACGAATTTAAGAATAGTTTAGTCGCTCATATTAGAAGAAAACATGGACCGGATGCGAATAAAGATGATATGCTAGAACGGTCCTGCGAAGTCTGCGCTCTAGTTTTTAAAGGGATCAACAGGTTAAGGATGCATATGAGACGGAAACATGGTTCCCACGAAGATGCATTTAATATAGTTTGCAAATATTGCGGATTGACGTACGATAAGCAATGTAGTCTTTTAGTACATATAAGAAGAAAACACACGCATAAGTCTAAGCCAAAAGCGAATTTGTGGCTGACTTGCCCGTTCTGCACGAAAACTTTTAATAAAAGAGAAACATATGCTAGACATATTCAAAGGAATCATAAAGTAAGAGAAGAGGGCGATGTGGGACAGTTGGAAGAAGATAAGTTTAAAAAGGATTATCTGAATGAGAGAACTGGTGAATATGCTTGCAAGGAATGTCCCGCTAGCTTTTCAACGGCTAGCTATTTGAAATGGCATATGAAGAGGAAGCATAACGCTGAGATCGCGGACTTTAGACTCAAATGTAAGATCTGTAGTCTTTCGTATGCGAATTCGGAAAGTTTGAAGCGACATGTAAGAAGAAAACATGACAAAGATACCTACTGTTATGACTGTAATAGGAAATTCCCTGATAAACAAACTTATTTAGACCATTCTCACACTAAAGATGTTAAGGAATGCACTATCTGTGGGTTGATTTTCGCGAATCAAGGCGGGCTCTCTAAACATTTACGATGTACACATAAGCTGGATAGTCCTTTGACGGTATTCTGTCCTATGTGTAACCAAGGTTTCTACAGCAAAAGACAGTTGAAACCACATATCAACCGCGTCCATCTTAAAGTAACATACACTTGCAAATATTGTAATAAAGTTTTCAAAACTAGAGATGTATACAAAAGGCATGTGACCATCAAACATTTACAATCGCCACCGGAAGATATGGAGACGCATCAGTGCGATAAATGTCCGGAAAAGTTCAAAGATGAGTTCGATCTATGCAAGCATAACAATCTGGTGCATGGTGATGATTCTAGCATAGCAGTAGTCATAAAGAAGGAGGACTCAGAAGATATTAAAAACGTCTTCAAGTGCACGAAATGTACCGATGAATATCTTACCTGGGAGTTGCTTCGAGTACACTTCGAGCAAACGCACCATATGACTGAAGAAGTGCAGTGCCAAATATGCGGGGACCTAATGAGTCGAGGAGATTTAGTCAAACACATCAAAGTCCACGATGAGATCGAAGTACAATGCCAATACTGCGAGTTTAAAAGCAAAAACCGGCTCAGCATGACTCAACATGTCTTGAGACACACCCAAGCTCAAACTTTGCACTGTGACTATCCAAACTGTCGATACAAATcattctatgaacatgctatGGTCAAACATAAGAAACGTCACCAAGAACTAGGAGTCAAACTACAATGTACAAGCTGCCCGTTCCAAACTATGAACAAATACATCTTGAAGTACCATGAAGAAGCTCATGAGACGGGTAAAAAGCGTTACCAATGTGATAAGTGTGATTATGCCACGATACTGCCAGCTAATTTAGTGCAACATAAGTATAAACATTCCACAGAGAAGAAATTTAAGTGTGAAGTGTGTCCGTTCGCGACTAAGTATAATACGTCTTTGCGATTCCATGTGAAGAAAAAACATTGTGATCTACCGACTTTGAGTTAG
- Protein Sequence
- MESGRVGTEAPSTNTSASADGSASPLFVDCDQVEENEQSWAEEGDHMVESEGNSMLDTDRAIFILYGVQGAEKLSIHMQPLITPECNLTKSEPIMSLSLLTEKEIKVEDDRKDPTSFLPQEEMSYEIKKKKKKKKKKKQEDPFKDLEGPLTMIREPDITALDPDIGSLDPEVTIKVEDIEVALDINDFDNDDGFVEEGYSENAQLQPAVKLEDQNRDHVLLTFQNIISDNLISDKLLKTEKMSPPHDSGENHFCQVCHLAFGSARTLDAHRKRSHKKFRQSFVHICNDCGMSYEFKNSLVAHIRRKHGPDANKDDMLERSCEVCALVFKGINRLRMHMRRKHGSHEDAFNIVCKYCGLTYDKQCSLLVHIRRKHTHKSKPKANLWLTCPFCTKTFNKRETYARHIQRNHKVREEGDVGQLEEDKFKKDYLNERTGEYACKECPASFSTASYLKWHMKRKHNAEIADFRLKCKICSLSYANSESLKRHVRRKHDKDTYCYDCNRKFPDKQTYLDHSHTKDVKECTICGLIFANQGGLSKHLRCTHKLDSPLTVFCPMCNQGFYSKRQLKPHINRVHLKVTYTCKYCNKVFKTRDVYKRHVTIKHLQSPPEDMETHQCDKCPEKFKDEFDLCKHNNLVHGDDSSIAVVIKKEDSEDIKNVFKCTKCTDEYLTWELLRVHFEQTHHMTEEVQCQICGDLMSRGDLVKHIKVHDEIEVQCQYCEFKSKNRLSMTQHVLRHTQAQTLHCDYPNCRYKSFYEHAMVKHKKRHQELGVKLQCTSCPFQTMNKYILKYHEEAHETGKKRYQCDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696705; iTF_00698565; iTF_00699495; iTF_00700373; iTF_00702263; iTF_00704316; iTF_00701342; iTF_00697631; iTF_01161633; iTF_00703309; iTF_00321812;
- 90% Identity
- iTF_00703309;
- 80% Identity
- -