Cv-a007243.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829899.1:17722611-17725747[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 1.1 10.3 2.2 1 23 152 175 152 175 0.95 2 17 1.7e-05 0.0012 19.6 0.6 1 23 184 207 184 207 0.96 3 17 0.0061 0.42 11.6 0.4 3 23 221 242 220 242 0.96 4 17 0.00042 0.029 15.2 1.7 2 23 252 274 251 274 0.96 5 17 3.8e-05 0.0026 18.5 0.8 2 23 287 309 286 309 0.96 6 17 1.5e-06 0.0001 22.9 2.7 1 23 337 360 337 360 0.97 7 17 5e-06 0.00035 21.3 1.8 2 23 370 392 369 392 0.96 8 17 0.085 5.9 8.0 1.0 2 19 397 414 396 417 0.91 9 17 0.00051 0.035 15.0 1.0 2 21 422 441 421 444 0.95 10 17 0.004 0.28 12.2 1.0 3 23 454 475 452 475 0.96 11 17 5.3e-05 0.0036 18.1 2.6 1 23 480 503 480 503 0.93 12 17 0.00074 0.051 14.5 3.2 1 23 514 537 514 537 0.95 13 17 0.049 3.4 8.7 2.2 1 23 559 582 559 582 0.91 14 17 7.5 5.2e+02 1.9 1.5 12 23 598 609 588 609 0.79 15 17 0.24 17 6.6 1.5 2 23 615 636 614 636 0.97 16 17 0.0042 0.29 12.1 0.2 1 23 702 724 702 724 0.97 17 17 0.19 13 6.9 2.0 1 23 730 753 730 753 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTACGACTAACAGAAAAAGAAATAGTAGAAGATGATCGTAAAGACCCCACATCTTACCTACCGCAAGAGGAAATGTGCTATGAgatcaagaagaagaagaaaaagaaaaaaaagaagaaacaAGAAGATCCATTCAAGGATCTGGAAGGACCAACTGTCATTCAAGAACCAGATATAACTGCTTTAGATCCGGATATTGGCAGTTTAGACCCCGAAGTGACAATCAAGGTGGAGGACATTGAAGTGGATTTGAAATTTGATGAGTTTGATAACGACGACGGTCTCGTCGAGGAGTCCTACTTCGACAACGGCCAACTGGAACCCACGGTCAAGTTGGAAGACCAGAACCAGGATGCCGTACTCCTAACCTTCCAAAGCATCATCAACGAAAACCTCCTAACTGACGAAGTCTTCAAAACCGAGAAAATGACAGACACAGCTGAAAACCACTTCTGCCAAGTCTGCCATTTAGCTTTCGGAACCGCCAAAACTTTAGACGCACACAGAAAACGCGCACATAAAAAATTCAGGCAGTCATTTCAACATATATGCAACGATTGCGGAATGGCCTATGAAAGGAAAAACAGTCTAGTCGCTCATATTAGACGGAAACACGGCCCGGACGCGAATAAAGACGATATGATTGAAAGACCATGTGAACTTTGCGCGCTCGTCTTCAAAGGACTATCCAGGCTCAGAATGCACATGCGACGGAAACACGGATCTCACGAAGAAGCCTTCAGTCTCTCCTGTGATTACTGCGGACTGACTTACGACAAGCAATGTAGTTTATTAGTACATATCCGGAGaaaacatacacataaaattaaGCCAAAAGCTAATTTATGGCTGACCTGCCCATTCTGCGGAAGGACATTTGATAAAAGAGAAACATACGCGAGACATATTCAGAGAAATCATAAAGTTAAAGATGAGGACGACGAAAAGCAAGTTCAAGAGGATACCTTCAAAAGGGAGTACATGAATGAAAAAACACGGGAATATTGCTGTAAAGATTGTCCAGCTAGCTTCTCTACCGCAAGCTATCTTAAATGGCATATGAAAAGGAAGCATAACGCTGAAATTGCAGATTTCAGGCTCAAATGTAAAATTTGTAATCTTTCATACTCAAATTCTGAGAGTTTAAAACGGCATGTCCGTAGAAAACATGATTTGGATTCTTATTGTTACGAGTGCAATAAAAAATTCCCTGATAGACAGGCCTTCTTAGAACATTCGCATTCCAGAGAAGTTAAAGAGTGCAATCTGTGTGGATTGATATTCGCAAATCAAGGTGGATTGTCCAAACATATGCGATGTACACACAAAATTGAAACACCTATAACTATTTTCTGTCCCATCTGCAATCAAGGGTTCCACAGCAAGAGACAATTAAAACCACACATAAATAAAGTGCATTTAAAAGTTACATATAACTGTAAATACTGCGGAAAGGTGTTTAAAACCAGAGAGGTTTACAAAAGACATGTTACACAGAAACATTTGCAAACTATGGTTGAAGATGCACAGACACATGAATGTGAAAAATGTCCAGAGAAATTCAAAGACGAATTTGATTTATGTAAGCACACTAATCTAGCACATGGTGATATGTCTACCTTACAAGTTGTTATCAAGAAAGAAGAGAGTGatgatataaaaaatgtttttaaatgtacCAAATGTACGGATGAGTATAGTAGTTGGGATTTACTAAGAACTCATTTCGAGCATGTTCATCATATGACCGAACAAGTGCAATGTCAAGTATGTGGTGATTTGATGTCCAGAGGAGATTTAATTAAGCATATAAAAGTCCACGATGAAATCGAGGTTCAGTGTCAATACTGTGAGTTTAAAAGTAAGAATCGGCTTAGTATGACCCAACACGTCCTGAGGCACACCAATGCACAAACATTGCGTTGTGATTATCCAAACTGTAGATATAAATCATTCTATGAACATGCTATGGTTAAACATAAGAAGAGACATCAAGAACAAGGTGTTAAACTTCAGTGTACAAGTTGTCCGTTCCAAACAATGAATAAATACATTCTTAAATACCACGAAGAAGCCCATGAGACTGGGAAAAAACGTTATCAGTGTGATAAATGTGATTATGCCACAATACTTCCGGCCAATCTGGTGCAACATAAGTATAAACATTCCACGGAGAAGAAGTTTAAATGTGAAGTGTGTCCGTTTGCTACTAAGTACAATACGTCATTGCGATTTCATGTTAAGAAAAAACATTGTGATCTGCCTACTATGAGTTAG
- Protein Sequence
- MSVRLTEKEIVEDDRKDPTSYLPQEEMCYEIKKKKKKKKKKKQEDPFKDLEGPTVIQEPDITALDPDIGSLDPEVTIKVEDIEVDLKFDEFDNDDGLVEESYFDNGQLEPTVKLEDQNQDAVLLTFQSIINENLLTDEVFKTEKMTDTAENHFCQVCHLAFGTAKTLDAHRKRAHKKFRQSFQHICNDCGMAYERKNSLVAHIRRKHGPDANKDDMIERPCELCALVFKGLSRLRMHMRRKHGSHEEAFSLSCDYCGLTYDKQCSLLVHIRRKHTHKIKPKANLWLTCPFCGRTFDKRETYARHIQRNHKVKDEDDEKQVQEDTFKREYMNEKTREYCCKDCPASFSTASYLKWHMKRKHNAEIADFRLKCKICNLSYSNSESLKRHVRRKHDLDSYCYECNKKFPDRQAFLEHSHSREVKECNLCGLIFANQGGLSKHMRCTHKIETPITIFCPICNQGFHSKRQLKPHINKVHLKVTYNCKYCGKVFKTREVYKRHVTQKHLQTMVEDAQTHECEKCPEKFKDEFDLCKHTNLAHGDMSTLQVVIKKEESDDIKNVFKCTKCTDEYSSWDLLRTHFEHVHHMTEQVQCQVCGDLMSRGDLIKHIKVHDEIEVQCQYCEFKSKNRLSMTQHVLRHTNAQTLRCDYPNCRYKSFYEHAMVKHKKRHQEQGVKLQCTSCPFQTMNKYILKYHEEAHETGKKRYQCDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPTMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705364;
- 90% Identity
- -
- 80% Identity
- -