Esub029309.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751126.1:5254986-5258599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.075 6 8.3 0.0 2 23 43 64 42 64 0.95 2 17 2.4 1.9e+02 3.6 0.1 2 23 93 115 92 115 0.81 3 17 0.00034 0.027 15.7 1.2 2 23 141 162 140 162 0.96 4 17 3 2.4e+02 3.3 1.1 1 21 166 186 166 189 0.73 5 17 0.13 10 7.6 1.5 1 22 193 214 193 214 0.93 6 17 0.00036 0.029 15.6 1.0 1 23 221 244 221 244 0.96 7 17 0.0069 0.56 11.6 0.2 1 17 251 267 251 268 0.93 8 17 0.83 67 5.1 0.4 3 23 295 315 293 315 0.93 9 17 0.89 72 5.0 0.2 2 23 344 366 343 366 0.90 10 17 0.09 7.3 8.1 0.3 3 23 393 413 391 413 0.95 11 17 0.017 1.3 10.4 0.2 1 23 417 440 417 440 0.94 12 17 1.1 87 4.7 1.6 1 22 444 465 444 465 0.90 13 17 0.00076 0.062 14.6 0.7 1 23 472 495 472 495 0.95 14 17 0.0011 0.085 14.2 0.6 1 23 502 525 502 525 0.94 15 17 0.11 9.2 7.8 2.6 2 23 531 552 530 552 0.95 16 17 0.00013 0.011 17.0 0.6 1 20 558 577 558 580 0.94 17 17 3.1e-05 0.0025 19.0 1.0 1 23 586 609 586 609 0.97
Sequence Information
- Coding Sequence
- ATGAAAAGCGAGTGGTCAAgatgtttcttttcttttctagaACTCAGAAAAATCTCGAAGAGGAATGCTGAGATCGTGTTAAAGTATTCAACAGTGTATCCGTTCAGGTCGCAAGGACCAAACTTGATCTGTGTGTACTGCTACGAAGAATTCGCAGGTCCCGAGGAGTACAGGGTCCATTTGGACTCTCATCGTAATGAAAACGTGTCCACTGCTTTCGGCCACCTCATAGGGAAAACAGGTAGACAATACCTCAAAGTTGACTGCTTTAACCTAAGATGCAGGTTATGTAACCAGTCTTTTGACGCTATCCCTGGTATAGCTCAACATCTCAAATCTGAACACGAGGACGTGGCGGGTAGCCTCAACCTAGACTATGAAGTAGGGGTGCATCCCTATAGATTGTTGAAAGACAAATGGACCTGCATGTTGTGCCATAAGAAATTCCCAAGCTTGCCAACGCTCGTGAGGCACATGTCGTCTCACTTCGCAGACCATGTTTGCAAAGTCTGCGGTAAATGGTTTCTGAAAGTTAGTACCATGAACGACCACGTCAAGTTCACCCACTCGGGAAAACACATCTGCAGGAAATGCAATAAGGAATTCCCCACAGACAAAGAAAAGAAGGAGCACCTAAAAACTTCTACGAAATGCATGCCGTTTACCTGTTACCAATGCGACGAGAGATTCTCCTCTTGGGAGATGAAGATCAAACATATGACCAGCTTGCATAACGTTGAGGCGCCTCAGTATCCTTGCACCGATTGCAAGATTGTCTTCTCCAACCGGAAAAaACTCAGGGCAATCGCGAAAAGGAATGCTGAGATCGTGTTAAGATATTCAACAGTGTTTCCGTTCAGGTTGCAAGGAAAAAACTTGATATGTGTATACTGCTGCGAAGCATTTGAAGATCCCGAGGAGTACAGGCAGCATTTTGACTCGCATCCTAATGTAAACGTGTCCACTGCCTTCGCGCACCTCAAAGGCGCTACAGGTAGAGAATACCTCAAAGTTGACTGCGTAAACCTAAGATGCAGGATATGTAACGAGCCGTTCGATGCCCTCCCTGATATAGCTCAACATCTCAAACATAATCACGAGGACGTAACGGATAGCCTCAACTTAGACTGTGAAGTAGGAATGCATCCTTATAGATTGTTGAAAGACAAATGGGCCTGCATGTTGTGCTACATGAAACTGCCGAGCTTGACAACGCTTACGAGGCACATGTCGTCTCATTACTCTGACTATGTTTGCGATGTCTGCGGTAGAGGCTATCTGAACATAACTAACTTAAAAATCCACGTCAAGTTCACCCACTCGGAGAAACACATCTGCAGGAAATGCAATAAGGAATTCCTCACAGCGAAAGAAAAGAAGGAGCACCTAAAAACGTCTACGAAATGCATGCAGTTCGCCTGCGTGCATTGCGGGGAGAGATTCTCCTCTTGGGAGATGAAGATCAAACATTTGACCAGCGAGCATAACATGAAGGCGTCTAACTACCCATGCACCGACTGCGAGCTCATCTTCCCCACCCGGAAAAACTTCTACAACCATTACTTTGTAGCGCACACTGACCAAGCGCTCAAGTGCTCCTGCTGTGACAAGAAGTTTTTGAATAAAACTCTGCTCGAAGACCATCTGATTACTCACACCAACGAGAAGCCGTTTGAGTGCTCTGTTTGTTCGAAGTTATTTACGAGGAACAAAGCACTGCGTCAGCACATGTGGATCCATAGTGAAAAGAAGAGATTTACTTGTGTTCTATGCGATAGGTCATTCAATCAGAAAGTTAGTTACTTATCGCATATGAAAAGTGCACATCCTAATACGTCGATATAA
- Protein Sequence
- MKSEWSRCFFSFLELRKISKRNAEIVLKYSTVYPFRSQGPNLICVYCYEEFAGPEEYRVHLDSHRNENVSTAFGHLIGKTGRQYLKVDCFNLRCRLCNQSFDAIPGIAQHLKSEHEDVAGSLNLDYEVGVHPYRLLKDKWTCMLCHKKFPSLPTLVRHMSSHFADHVCKVCGKWFLKVSTMNDHVKFTHSGKHICRKCNKEFPTDKEKKEHLKTSTKCMPFTCYQCDERFSSWEMKIKHMTSLHNVEAPQYPCTDCKIVFSNRKKLRAIAKRNAEIVLRYSTVFPFRLQGKNLICVYCCEAFEDPEEYRQHFDSHPNVNVSTAFAHLKGATGREYLKVDCVNLRCRICNEPFDALPDIAQHLKHNHEDVTDSLNLDCEVGMHPYRLLKDKWACMLCYMKLPSLTTLTRHMSSHYSDYVCDVCGRGYLNITNLKIHVKFTHSEKHICRKCNKEFLTAKEKKEHLKTSTKCMQFACVHCGERFSSWEMKIKHLTSEHNMKASNYPCTDCELIFPTRKNFYNHYFVAHTDQALKCSCCDKKFLNKTLLEDHLITHTNEKPFECSVCSKLFTRNKALRQHMWIHSEKKRFTCVLCDRSFNQKVSYLSHMKSAHPNTSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700466; iTF_00697614; iTF_00701374;
- 90% Identity
- -
- 80% Identity
- -