Ecen012001.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:464029-471164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.27 21 6.6 0.2 5 23 5 24 2 24 0.92 2 20 9 7.1e+02 1.8 0.0 2 23 49 71 48 71 0.93 3 20 0.44 35 5.9 0.1 1 23 95 117 95 117 0.95 4 20 0.00094 0.074 14.3 0.1 1 21 121 141 121 142 0.95 5 20 2.1 1.7e+02 3.7 1.4 1 23 176 198 176 198 0.96 6 20 0.085 6.7 8.2 0.1 2 23 227 249 226 249 0.95 7 20 0.026 2 9.8 0.9 2 23 275 296 274 296 0.96 8 20 0.0058 0.46 11.8 0.2 1 23 300 323 300 323 0.95 9 20 0.28 22 6.5 1.0 2 22 328 348 327 348 0.93 10 20 0.0002 0.015 16.5 0.7 1 23 355 378 355 378 0.96 11 20 0.0068 0.53 11.6 0.2 1 17 385 401 385 402 0.93 12 20 0.0012 0.098 13.9 0.2 2 23 428 449 427 449 0.96 13 20 0.046 3.7 9.0 1.4 2 23 526 547 525 547 0.96 14 20 0.015 1.2 10.5 0.0 1 23 551 574 551 574 0.93 15 20 0.085 6.7 8.2 1.2 1 22 578 599 578 599 0.94 16 20 0.03 2.3 9.6 2.8 1 23 606 629 602 629 0.91 17 20 0.0033 0.26 12.6 0.4 1 23 636 659 636 659 0.90 18 20 0.026 2.1 9.8 3.2 2 23 665 686 664 686 0.95 19 20 0.00015 0.012 16.8 0.7 1 20 692 711 692 714 0.94 20 20 9.8e-05 0.0077 17.4 1.2 1 23 720 743 720 743 0.97
Sequence Information
- Coding Sequence
- ATGATGTGCATTCTGTGCAGCGAGACTTTCTCAGAAGCAGCCGTGTTCAGGCGTCACATGGACAAAGAACacgaaaaatttaatttaaagatcTCATTCTCACATGTTGCCGACGGACAACTGAAAGTTGACATCACAGAATTAAGTTGTCGAATATGCGCCTCACCGTTTGATAGCCTTGAGGCAATAGCTGATCACTTAATTACAGCACATTCTAAATTTATAGATCTCCACGATAAGAATGATTTAGGATTGCAACCATATCGATTGGAAAATGAGAAATTTGTTTGCGCGATTTGTCATCTCAAGATAGCAAACATTGTGGCTTTAAGCAGACACACTGGTAAACATTTCAGAAGCTTTATCTGCGAGCATTGCGGGAAATCGTATGCCGCGAAAGGGGCTCTGATGTATCACGTGAGATACTTGTGCTCTAAAGATGaACTCAGAGCAATCGCGAGAAGGAATGCTGAGATCGTGTTAAAGTACACGACAGTTTACCCGTTCAGGTTGCAAGGAAAAATCTTTATATGTGTGTATTGCTGCGAAGAATTTCAAAGTACTGACGAGTACAAGATCCATTTAGACTCCCACCTTAATGTTAACGTGACCACCGCCTTTGGTCACCTCGGAGGGGCTAGATGTAGGGAATACCTCAAAGTCGATTGCGCTAACCTCAAATGCAGGCTGTGTAATGAGCCTTTTGATTCCCTCCCTGATGTAGCCCAACATCTCAAATATGAACATGAAGACGTTGCGGGTAGTCTCAACTTAGACTGCGAAGTCGGATTACATCCCTATAAGCTGTTGAAAGGCAATTGGTCTTGCATGGTGTGTCACCAGAAACTGCCAAGCTTAACAACACTTGTGAGGCATATGTCGTCACATTACGCTGACTATTTTTGCGATATCTGCGGCAAAGGATATCTGAACCTCCAGAACTTGAATCTCCACGTCAAATACGCTCACCCAGCGAAGCAAATGTGCAGGAAATGTAAGAAGGAATTCCCCACAGTGAACGAAAAGAAGGAACATCAAAAAACGTCTACGAAATGCATGCAGTATGCCTGTGTCCATTGCGGAGAGAGATTTTCATCATGGGAGATGAAAATCAAACATATGACTAGCGAGCATAATGTTGAAGCTCCTCAGTACCCTTGCAACGACTGCAAGATCGTCTTCTCCAATCGGAAAAaaCTCAGAGCAATCGCGACAAGGAATGCTGAGATCGTGTTACGGTATTCGACAGTGTTTCCGTTCAGGTTGCAAGGACTAAAATTGATATGTGTGTACTGCGGCGAGGCATACGAAGATCCCGACGAGTACAGGCACCATTTTAAGTCTCATCCTAAAGTTAACATGTCTACAGCCTTCGCGCATCTTAGGAGCGCCACTggaagagaatttctcaaagtTGACTGCGTCGATCTAAGCTGCAGGATATGTGAAGAGGAGTTCTTTGCTATCCCTGAAATAGCTCAACATCTCAAATATGAACATGGAGATATAGCCGATAGCCTCAATCTAGACTTTGAAGTAGGAATGCATCCCTACAGATTGTTAAAAGACAAATGGACCTGCATGTTGTGCCACACGAAATTGCCGAGCCTGACAAAGCTTGCGAGGCACATGTCGTCACATTACGCGGACTATGTTTGCGATGTCTGCGGTAAAGGCTATTTGAACATAGCAAACTTGAACATCCACGTCATGTTCGCCCACTCAGAGAAACACATCTGCAGGAAATGCAAGAGGGAATTCCCCACAGCGACAGAAAAGAAGGAGCACTTAAAAACATCTACGAAATGCATGCAGTATGCTTGTATACATTGCGGGGAGAGATTTTCCTCTTGGGAGACAAAGAATAAACATCTGACGAGCGAGCATAACGTTAAGGCGTCTGAGTACCCATGCACCGATTGCGATAAAGTCTTCGACGACCGGAAAATCTTCTACAACCATTATATCGTAGAGCACACTGACCAAGCACTCAAGTGCTCCTGCTGTGAAAagaagtttatgaataaaaatcagCTTGACGAACATATGATCACTCACACCAACGAGAAGCCGTTTGAGTGTTCTGTTTGTTCGAAGTTATTTACTAGGAAAAGGGCGCTGCGTCAGCACATGTGGATACACAGTGAAAAGAAGAGATTTACTTGTGTTTTATGCGATAAGACATTCAATCAGAAAGTTGGTTACTTATCTCATATGAAGAATAATCATCCTAATTCGTCGATATAA
- Protein Sequence
- MMCILCSETFSEAAVFRRHMDKEHEKFNLKISFSHVADGQLKVDITELSCRICASPFDSLEAIADHLITAHSKFIDLHDKNDLGLQPYRLENEKFVCAICHLKIANIVALSRHTGKHFRSFICEHCGKSYAAKGALMYHVRYLCSKDELRAIARRNAEIVLKYTTVYPFRLQGKIFICVYCCEEFQSTDEYKIHLDSHLNVNVTTAFGHLGGARCREYLKVDCANLKCRLCNEPFDSLPDVAQHLKYEHEDVAGSLNLDCEVGLHPYKLLKGNWSCMVCHQKLPSLTTLVRHMSSHYADYFCDICGKGYLNLQNLNLHVKYAHPAKQMCRKCKKEFPTVNEKKEHQKTSTKCMQYACVHCGERFSSWEMKIKHMTSEHNVEAPQYPCNDCKIVFSNRKKLRAIATRNAEIVLRYSTVFPFRLQGLKLICVYCGEAYEDPDEYRHHFKSHPKVNMSTAFAHLRSATGREFLKVDCVDLSCRICEEEFFAIPEIAQHLKYEHGDIADSLNLDFEVGMHPYRLLKDKWTCMLCHTKLPSLTKLARHMSSHYADYVCDVCGKGYLNIANLNIHVMFAHSEKHICRKCKREFPTATEKKEHLKTSTKCMQYACIHCGERFSSWETKNKHLTSEHNVKASEYPCTDCDKVFDDRKIFYNHYIVEHTDQALKCSCCEKKFMNKNQLDEHMITHTNEKPFECSVCSKLFTRKRALRQHMWIHSEKKRFTCVLCDKTFNQKVGYLSHMKNNHPNSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703313;
- 90% Identity
- -
- 80% Identity
- -