Eint024557.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- -
- Assembly
- GCA_963662085.1
- Location
- OY759205.1:2805885-2809041[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.047 3.4 8.9 0.4 2 21 55 74 54 75 0.92 2 18 1.3 95 4.4 0.3 1 23 115 137 115 137 0.96 3 18 0.92 68 4.8 0.0 2 23 166 188 165 188 0.93 4 18 0.017 1.2 10.3 0.7 2 23 214 235 213 235 0.97 5 18 0.006 0.44 11.7 0.5 1 23 239 262 239 262 0.95 6 18 0.084 6.1 8.1 2.4 1 22 266 287 266 287 0.94 7 18 0.00023 0.017 16.2 0.8 1 23 294 317 294 317 0.95 8 18 0.053 3.9 8.7 0.5 1 21 324 344 324 345 0.92 9 18 0.36 26 6.1 0.4 3 23 374 394 372 394 0.93 10 18 0.55 40 5.6 0.5 2 23 423 445 422 445 0.92 11 18 0.034 2.5 9.4 0.7 2 23 471 492 470 492 0.96 12 18 0.0058 0.43 11.8 0.2 1 23 496 519 496 519 0.95 13 18 1.1 80 4.6 1.1 1 22 523 544 523 544 0.94 14 18 0.036 2.6 9.3 0.5 1 23 551 574 551 574 0.84 15 18 0.00041 0.03 15.4 0.3 1 23 581 604 581 604 0.94 16 18 0.12 9.2 7.6 2.6 2 23 610 631 609 631 0.95 17 18 0.00015 0.011 16.8 0.6 1 20 637 656 637 659 0.94 18 18 9.8e-05 0.0072 17.3 1.1 1 23 665 688 665 688 0.97
Sequence Information
- Coding Sequence
- ATGGATCTGCATGTTTTGCCATATGAAACTCCGAGCTTGCCAACGCTCGTGAAGCAGATGTCGTCTCACTTCGCAGACTATGTTTGCGATGTCTGCGTTAAATGGTTTCTGAAAGTTAACACCACGAATGACCTCATCAAGTTGACCCACTCGGGGAAACTCAACTGCACGAGATGCAATAAGGAATTCCCTACGGCGAAAGAAAAGAAGGAGCACCTAAAACTTCTACGAAATGCATGCCGTTTACCTGTTACCAATGaacTCAGAGCAATCGCGAGAAGGAATGCTGAGATCGTGTTAAAGTATTCGACAGTGAGCCCGTTCAGGTTGCAAGGAAAAATCTTTATATGTGTGTACTGCTGCGAAGAATTTGAAGGTGCCGATGAGTACAGGATTCATTTAGACTCTCATCTTAATGTTAACGTATCCACTGCATTCGGTCACCTCGGAGGTGCTAGATGCAGAGAATATCTCAAAGTTGACTGCGTTAACCTCAAATGCAGGCTGTGTAACGAGCCGTTCGATGCCCTCCCTGATATAGCTCAACATCTCAAATCTGAACATGAGGACGTGGCGAATAGCCTCAACTTAGACAGCGAATTAGGGTTGCATCCTTATAGATTGTTGAAAGACAAATGGACCTGCATGGTGTGTCACCAGAAGCTGCCGAGTTTGATAACGCTTGTGAGGCACATGTCGACTCATTATGCGGACTATTTTTGCGATATCTGCGGTAAAGGCTATCTAAACCTCCAGAACTTGAATCTGCACGTTAAGTACACTCATTCAGCGAAGCACATGTGCAGAAAATGCAAGAAAGAATTCCCTACACTGAACGAAAAGAAGGAACATCAGAAAACATCTACGAAATGCTTGCAGTTTGCCTGTGTCCATTGCGGGGAGAGATTCTCCTCTTGGGAGATGAAGATCAAACATATGACTAGCGAACATAACGTTGATGCGCCTCAGTACCCTTGCATCGATTGCAAGATCGTCTTCACCAACCGGAAAAGTTTCTATAATCATTATCaACTCAAAGCAATCGCGAAAAGGAATGCTGAGATCGTGTTAAGGTATTCGACAGTGTTTCCGTTCAGGTTGCAAGGACAAAACTTGATATGTGTTTACTGCTGCGAAGTATTTGAAGATCCCGACGAGTACAGGCAGCATTTTGACTCGCATCCTAATGTAAACGTGACCACTGCCTTCGCGCACCTCAGAGGCGCGACAGGTAGAGAATATCTCAAAGTTGACTGCGTTAACCTAAGATGCAGGATATGTAACGAGCCGTTCAATGCCCTCCTTGATATAGCTCGACATCTCAAACATAATCATAAGGACGTAACGGATAGCCTCGAATTAGACTGTGAAGTAGGAATGCATCCCTACAGATTGTTGAAAGATAAATGGACCTGCATGTTGTGCCACATTAAACTGCCGAGCTTGACAACGCTTGCGAGGCACATGTCGTCTCACTACGCAGACTATGTTTGCGATGTCTGCGGTAGAGGCTATCTGAACATAACGAACTTGAAAATCCACATCAAGTTCACCCACTCGGAGAAACACATCTGCAGGAAATGCATGAAGGAATTCCCCACGGCGAAAGAAAAGAAGGAGCACCTAAAAACATCTACGAAATGCATGCAGTTTGCCTGTGTCCATTGTGGGGAGAGATTCTCCTCTTGGGAGATAAAGATAAAACATTTGACCAGCGAGCATAACGTTAAGGCCTCCAAGTACCCATGCACCGATTGCGAGCTCGTTTTCCCCACTCGGAAAAACTTTTACAACCATTACGTCGTAGCGCACACTAACCAAGCGCTCAAGTGCTCTTGCTGTGACAAGaagtttttgaataaaactCTGCTCGAAGACCATCTCATCACTCACACCAACGAGAAGCCGTTTGAGTGCTCTGTCTGTTCAAAGTTATTTACGAGGAACAAGGCGCTGCGTCAGCACATGTGGATCCATAGTGAAAATAAGAGATTTACTTGTGTTTTATGCGATAGGTCATTCAATCAGAAAGTTGGTTACTTATCTCATATGAAAAGTACACATCCTAATACGTCGATATAA
- Protein Sequence
- MDLHVLPYETPSLPTLVKQMSSHFADYVCDVCVKWFLKVNTTNDLIKLTHSGKLNCTRCNKEFPTAKEKKEHLKLLRNACRLPVTNELRAIARRNAEIVLKYSTVSPFRLQGKIFICVYCCEEFEGADEYRIHLDSHLNVNVSTAFGHLGGARCREYLKVDCVNLKCRLCNEPFDALPDIAQHLKSEHEDVANSLNLDSELGLHPYRLLKDKWTCMVCHQKLPSLITLVRHMSTHYADYFCDICGKGYLNLQNLNLHVKYTHSAKHMCRKCKKEFPTLNEKKEHQKTSTKCLQFACVHCGERFSSWEMKIKHMTSEHNVDAPQYPCIDCKIVFTNRKSFYNHYQLKAIAKRNAEIVLRYSTVFPFRLQGQNLICVYCCEVFEDPDEYRQHFDSHPNVNVTTAFAHLRGATGREYLKVDCVNLRCRICNEPFNALLDIARHLKHNHKDVTDSLELDCEVGMHPYRLLKDKWTCMLCHIKLPSLTTLARHMSSHYADYVCDVCGRGYLNITNLKIHIKFTHSEKHICRKCMKEFPTAKEKKEHLKTSTKCMQFACVHCGERFSSWEIKIKHLTSEHNVKASKYPCTDCELVFPTRKNFYNHYVVAHTNQALKCSCCDKKFLNKTLLEDHLITHTNEKPFECSVCSKLFTRNKALRQHMWIHSENKRFTCVLCDRSFNQKVGYLSHMKSTHPNTSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703313;
- 90% Identity
- iTF_00700466;
- 80% Identity
- -