Epul023553.1
Basic Information
- Insect
- Eupithecia pulchellata
- Gene Symbol
- -
- Assembly
- GCA_963931895.1
- Location
- OZ007549.1:770438-772027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.6e-06 0.00025 21.9 1.6 3 23 82 103 81 103 0.95 2 14 0.0017 0.12 13.5 2.6 2 23 110 132 109 132 0.95 3 14 0.026 1.9 9.7 2.3 2 23 139 161 139 161 0.93 4 14 1.4e-05 0.001 20.0 0.5 3 23 170 191 168 191 0.95 5 14 0.0001 0.0074 17.3 0.5 2 23 199 221 198 221 0.95 6 14 0.04 2.9 9.1 1.9 1 23 228 251 228 251 0.96 7 14 7.3e-05 0.0052 17.8 2.0 2 23 258 280 258 280 0.96 8 14 3.2e-05 0.0023 18.9 2.5 1 23 293 315 293 316 0.96 9 14 5.6e-05 0.004 18.1 0.2 2 23 327 349 326 349 0.94 10 14 2.2e-06 0.00015 22.6 1.1 2 23 355 377 355 377 0.97 11 14 0.24 17 6.7 2.1 3 23 386 407 384 407 0.90 12 14 1e-05 0.00072 20.5 2.7 1 23 412 434 412 434 0.98 13 14 0.00052 0.037 15.1 1.6 1 23 440 463 440 463 0.95 14 14 1.2 88 4.4 0.1 3 20 491 507 490 509 0.91
Sequence Information
- Coding Sequence
- ATGGAGGAAGTAaccataaaaacagagatagaGATTGAAATCAAGCAAGAGAACCCTGAAAATGATGAAGACCATTTTGACTACTCCAGTGCTAAACCTGAGTATGTTGATGTAACCAACGCTCTTAAGATTGAGCCTAAAGAAGACTGCAGTTTTAAGGAAATCCCAGCTCATATTGAGAGTATAACAACACCAGTCCTCCAAGGCAAGGTCTATGAAAATGGTAAAATCAATAGACTATTATGCAATCTATGTGATAAATCCTTTAAAAACCGAGCGAATCTAAAGAACCATTTAAAATTTGTCCACTCAGATGAACATACTGTGGAATGTGCACAATGCTTTCGTACATTCAAGTCACATGGACATCTCAGTTCCCACATCAGCTCGGTGCATGCTGAAGCTATCGAGGCCACATGTCAGTTCTGCAGTAAAGTATTCCTCAACCAGAAGAAGCTTAAAAACCACATTTATTACACACATCCCCAGCCGACCGAGCAAGTAAACTGTACAGTGTGTTCCAAAACCTACAAATCTGCTTACAGTCTTAAAATCCACATGAAATTAGTCCACCCTGATGATGAGAAGTCTGTTCCTTGCCCGCACTGTTCCAAGGTATTCAAGGTGgatatgctgttacaacggcaCATAAAATGGAGCCACCCACTCGATGGAATGGTCTACAAATGTCAGCAATGCCTAAAAGTACTACCATCTTTAGCTTGCTACAAGAAGCATATAGAGAACACCCATGATATAAATTCAAGAGCTACTTGCGAACTTTGCAAGCGCGTTTTTAAGAACAAAAAGTCTCTCGACAGACATCTTAAGAATGTACACAATGGGAAGGAAGTAAAACCCTACGTTCCAAATCCATTTGTTTGCACAGTTTGTGAACGCACCTTTGAGACGAAGACATCTTTGTTCTGGCATGTACAGAAGCATCATAATGACTCAGAATCACCAGAATCGTCCACTTATTGTGAGATATGTCAACGGAATTATTCAGATAACGCTTCCCTACAGCGCCACCTCGCATCTGTACACTCCTTAGAAACGGCCACCTGTAAAATCTGTTCCAAGGAGTTTAAATCACTTGTGAACCTACAAAGTCATATGAGAATCACTCATGCACCTCCTGAGGCGAACCAAATCTGTGGTGTTTGCCAGAAAAGTTTCAAATGCGCATTACATCTTCGGATGCACACCTTGGCAGTTCACACCGACGGTGAATTTAATTGTGACATTTGCAGTAAAACATTTGCTTCTCTCAAATACTTGACTAAGCATAAAAAAACCCACTCAAATGCAAGGGAGCACCCTTGTAAAGTATGTGGGAAAATGTTCAAAAGTGTATTCCTAGCAAATAAGCATACGAGAAATGTGCATAACAGTGTTAAATGTTCATTCTGTGGCATTAAGCAAGCGAATATTGAGGAACATTTGCTTAAGTGTGTTAAGAAAGCAGATTGTGTTAAGTGTGGGTCAGCGTTTAAAAGCGATGAGCTACACGAGCATATCCTAGATTGTGGTGGCGTGACTGTTAAAATAGAGATTGAAGCGGTTGATGAGAATTCTATAGATATGTAA
- Protein Sequence
- MEEVTIKTEIEIEIKQENPENDEDHFDYSSAKPEYVDVTNALKIEPKEDCSFKEIPAHIESITTPVLQGKVYENGKINRLLCNLCDKSFKNRANLKNHLKFVHSDEHTVECAQCFRTFKSHGHLSSHISSVHAEAIEATCQFCSKVFLNQKKLKNHIYYTHPQPTEQVNCTVCSKTYKSAYSLKIHMKLVHPDDEKSVPCPHCSKVFKVDMLLQRHIKWSHPLDGMVYKCQQCLKVLPSLACYKKHIENTHDINSRATCELCKRVFKNKKSLDRHLKNVHNGKEVKPYVPNPFVCTVCERTFETKTSLFWHVQKHHNDSESPESSTYCEICQRNYSDNASLQRHLASVHSLETATCKICSKEFKSLVNLQSHMRITHAPPEANQICGVCQKSFKCALHLRMHTLAVHTDGEFNCDICSKTFASLKYLTKHKKTHSNAREHPCKVCGKMFKSVFLANKHTRNVHNSVKCSFCGIKQANIEEHLLKCVKKADCVKCGSAFKSDELHEHILDCGGVTVKIEIEAVDENSIDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701301; iTF_00699464; iTF_00706274; iTF_00700333; iTF_00704265; iTF_00703253; iTF_00705302; iTF_00697610; iTF_00696669;
- 90% Identity
- -
- 80% Identity
- -