Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438635.1:5706886-5708490[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.4e-06 0.00012 23.3 1.5 2 23 84 106 83 106 0.93

2 14 0.00095 0.081 14.3 3.5 2 23 113 135 112 135 0.95

3 14 0.034 2.9 9.5 2.2 3 23 143 164 142 164 0.93

4 14 1.5e-05 0.0013 20.0 0.5 3 23 173 194 171 194 0.95

5 14 0.00011 0.0095 17.3 0.5 2 23 202 224 201 224 0.95

6 14 0.043 3.7 9.1 1.9 1 23 231 254 231 254 0.96

7 14 4e-05 0.0034 18.7 1.4 2 23 261 283 260 283 0.95

8 14 7.7e-05 0.0066 17.8 2.7 1 23 296 318 296 319 0.95

9 14 0.00011 0.0094 17.3 0.7 3 23 331 352 329 352 0.94

10 14 8.3e-06 0.00071 20.8 1.1 2 23 358 380 358 380 0.97

11 14 0.17 14 7.3 2.2 3 23 389 410 387 410 0.90

12 14 1e-05 0.00089 20.5 2.1 1 23 415 437 415 437 0.98

13 14 0.00023 0.02 16.3 1.9 1 23 443 466 443 466 0.96

14 14 0.42 36 6.0 0.1 3 20 494 510 493 512 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.4e-06	0.00012	23.3	1.5	2	23	84	106	83	106	0.93
2	14	0.00095	0.081	14.3	3.5	2	23	113	135	112	135	0.95
3	14	0.034	2.9	9.5	2.2	3	23	143	164	142	164	0.93
4	14	1.5e-05	0.0013	20.0	0.5	3	23	173	194	171	194	0.95
5	14	0.00011	0.0095	17.3	0.5	2	23	202	224	201	224	0.95
6	14	0.043	3.7	9.1	1.9	1	23	231	254	231	254	0.96
7	14	4e-05	0.0034	18.7	1.4	2	23	261	283	260	283	0.95
8	14	7.7e-05	0.0066	17.8	2.7	1	23	296	318	296	319	0.95
9	14	0.00011	0.0094	17.3	0.7	3	23	331	352	329	352	0.94
10	14	8.3e-06	0.00071	20.8	1.1	2	23	358	380	358	380	0.97
11	14	0.17	14	7.3	2.2	3	23	389	410	387	410	0.90
12	14	1e-05	0.00089	20.5	2.1	1	23	415	437	415	437	0.98
13	14	0.00023	0.02	16.3	1.9	1	23	443	466	443	466	0.96
14	14	0.42	36	6.0	0.1	3	20	494	510	493	512	0.88

Sequence Information

Coding Sequence: ATGGAAGAAGTTTCTATAAAAATGGAGATAGAAGTTGAAATCAAACCAGAAAAACTTGAAAATAATGAAGTAAATATTGACTATACCAATGCAAAACCGGAGTATGTTGATGTAACCAATGGACTCAAAATTGAACCCAAAGACGATTGCAATTTTGACGAACTTCCAGCCCATCACATTGAGAACACAGATATAATAACTGCAGGACTCCAAGGCAAAGTCTATGAAAATGGTAAAGTCAATAGGCTATCCTGCAACCTTTGTGATAAATCCTTTAAAAACCGAGCGAATCTAAAAAACCATTTAAAATTTGTCCATTCAGATGAACATTCCGTGGAATGTACACAATGCTTTCGTACATTCAAGTCCCATGGACACCTGAGTTCACACATCAGCTCAGTGCATGCTGAAGCAGTCGAGGCCTCATGCCAGTTCTGCAGTAAAGTATTCCTCAATCAGAAGAAGCTGAAAAACCACATCTATTACACTCATCCACAGCTTAATGAGCAGGTTAACTGTACAGTGtgttcaaaaacttacaaatcaGCTTACAGTCTTAAAATCCACATGAAACTAGTCCATCCCGATGATGGAAAATCTGTTCCATGCCCACACTGTTCCAAAGTCTTCAAAGTAGACATGCTCTTGCAACGACATATAAAATGGAGTCACCCACTCGATGGAATGGTCTACAAATGCCAGCAATGCTTAAAAGTCTTACCGTCCCTAGCTTGCTACAAGaaacacatagaaaacacgcatGATTTAACTGCTAGAGTGACTTGTGAACTTTGTAAGCGCGTTTTTAAGAACAAAAAGTCGCTTGACAGACATCTTAAGAATGTACACAATGGGAAGGAAGTGAAATCCTATGTTCCGAATCCATTTGTGTGTACAGTATGTGAACGTACCTTTGAGACGAAGACATCTTTGTTCTGGCATGAGCAAAAGCATCACAGTGAGACAGAATCACAGGAATCATCCACTCATTGCGAGATATGTCAACGTAACTACTCAGATAATGCTTCGTTGCAGCGCCACTTAGCATCTGTCCACTCATTAGAAACGGCCACCTGCAGAATCTGTTCCAAGGAGTTTAAATCACTCGTAAACTTGCAGAGTCACATGAGAATCACGCATGCACCGCCTGAGGCAAACCAAATCTGTGGTATATGTCAGAAAACATTCAAATGTGCATTACATCTTCGAATGCACACCTTAGCAGTGCATACGGATGGTGAATTTCCTTGTGACATTTGCAGCAAAAAGTTTGCCTCTCTCAAATACTTGACTAAGCATAAAAAAACCCACTCGAGCGCAAGAGAACACCCTTGTAAAGTATGTGGGAAAATGTTCAAAAGTCTGTTCCTAGCGAATAAACATACAAGAAATGTTCATAATAGTGTTAAATGTTCATTCTGTGGTGTTAAACAAGCGAATATTGAGGAACATTTGGTTAAGTGTGTTAAGAAGGCGGACTGTGTTAAGTGTGGGTTAGCTTTTAAGAGTGAGGAGCTTCATGAGCATATTTTAAACTGTGGTTCTAAGGTCATTAAGATAGAGATTGAAGAGGTCACAGATAATTCTTCTTCAATAGATATGTAA
Protein Sequence: MEEVSIKMEIEVEIKPEKLENNEVNIDYTNAKPEYVDVTNGLKIEPKDDCNFDELPAHHIENTDIITAGLQGKVYENGKVNRLSCNLCDKSFKNRANLKNHLKFVHSDEHSVECTQCFRTFKSHGHLSSHISSVHAEAVEASCQFCSKVFLNQKKLKNHIYYTHPQLNEQVNCTVCSKTYKSAYSLKIHMKLVHPDDGKSVPCPHCSKVFKVDMLLQRHIKWSHPLDGMVYKCQQCLKVLPSLACYKKHIENTHDLTARVTCELCKRVFKNKKSLDRHLKNVHNGKEVKSYVPNPFVCTVCERTFETKTSLFWHEQKHHSETESQESSTHCEICQRNYSDNASLQRHLASVHSLETATCRICSKEFKSLVNLQSHMRITHAPPEANQICGICQKTFKCALHLRMHTLAVHTDGEFPCDICSKKFASLKYLTKHKKTHSSAREHPCKVCGKMFKSLFLANKHTRNVHNSVKCSFCGVKQANIEEHLVKCVKKADCVKCGLAFKSEELHEHILNCGSKVIKIEIEEVTDNSSSIDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00702229;
90% Identity: iTF_00705302;
80% Identity: -