Eabb009135.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000068.1:363445-365058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.3e-06 0.00037 21.0 2.0 3 23 88 109 87 109 0.95 2 13 0.00085 0.05 14.3 3.5 2 23 116 138 115 138 0.95 3 13 0.026 1.5 9.7 1.5 3 23 146 167 145 167 0.93 4 13 4.1e-05 0.0024 18.5 0.3 3 23 176 197 174 197 0.95 5 13 9.9e-05 0.0058 17.2 0.5 2 23 205 227 204 227 0.95 6 13 0.11 6.4 7.7 1.9 1 23 234 257 234 257 0.96 7 13 6.9e-05 0.0041 17.7 2.0 2 23 264 286 264 286 0.96 8 13 1.2e-06 7.2e-05 23.3 0.6 1 23 299 322 299 322 0.97 9 13 0.00024 0.014 16.0 0.3 2 23 333 355 332 355 0.92 10 13 2.1e-06 0.00012 22.5 1.1 2 23 361 383 361 383 0.97 11 13 0.27 16 6.5 2.2 3 23 392 413 390 413 0.90 12 13 2e-05 0.0012 19.4 3.2 1 23 418 440 418 440 0.99 13 13 0.00031 0.018 15.7 1.6 1 23 446 469 446 469 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGAGTTTCCATAAAAACGGAAATAGAGATTGAAATAAAGCAAGAAAACCCTGAAAATAATGAAGTAAATTATATAAATATTGACTATATCAATGTTAAACCTGAGTATGTTGATGTGACCAACGGACTGAAAACTGAACCCAAGGAAGATTTCAATTGTAAGGAACTCCCAGCCCCGCCCAGTGAGAATACTGATATAATAACTGCAGGGCTCCAGGGCAAAGTCTATGAAAATGGTAAAGTGAATAGGCTACTCTGCAACCTATGTAATAAATCTTTTAAAAACCGAGCGAATCTAAAAAACCATTTAAAATTTGTCCATTCAGATGAACACAGCGTGGAATGTACACAATGCTTTCGAACATTCAAGTCCCACGGACATCTGAGTTCACATATCAGCTCAGTGCATGCTGAGGCGCAAATGGCCGCATGTCAGTTCTGCAGTAAAGTGTTCCTCAATCAGAAGAAGCTAAAAAACCACATCTATTACACTCATCCGCAGCCAACTGAACAGGTTAACTGTGCAGTCTGCTCAAAAACCTACAAATCAGCTTACAGCCTTAAAATCCACATGAAATTAGTCCACCCTGATGATGGAAAGTCAGTTCCTTGCCCACACTGTTCCAAAGTCTTCAAAGTGGATATGCTCTTGCAACGGCATATTAAATGGAGCCACCCACTTGATGGGATGATCTACAAATGTCAGCAATGCTTAAAAATCCTACCATCCCTAGCTTGCTATAAGAAACACATTGAAAACACGCATGATTTAACTGCTAGGGCGACTTGCGAACTTTGCAAGCGCGTTTTTAAGAACAAAAAGTCTCTAGACAGACATCTAAAGAATGTCCACAATGGGAAGGAAGTGAAACCCTACGTACCAAGTCCATTCGTGTGCCCAGTATGTGAACGTACCTTTGAGACGAAGACATCTCTGTTCTGGCATATGCAAAAGCTACACAGTGATACAGAATCAATGGAATCATCCACTTATTGCGAGATATGTCAAAGAAACTATTCAGATAATGCTTCCTTGCAGCGCCACTTTGCATCTGTACATTCCTTAGAGACAGCGACCTGTAAAATTTGCTCCAAGGAGTTTAAATCTCTTGTAAACTTGCAAAGTCATATGAGAATAACCCATGCCCCGCCTGAGGCAAACCAAATCTGTGGGGTATGCCAGAAAACTTTCAAATGTGCATTACATCTTCGAATGCACACATTAGCAGTTCACACGGACGGTGAATTTACATGTGACGTTTGCAGTAAAAAGTTCGCTTCTCTCAAATACTTGACTAAACATAAAAAAACCCATTCGAACGCAAGGGAACACCCTTGCCAAGTATGTGGGAAAATGTTCAAAAGTCTGTTCCTAGCGAATAAGCACACAAGAAATGTGCATAATAGCGTTAAATGTTCATTCTGTGGTATTAAACAAACAAATATTGAGGAACATTTGGCTAAATGTGTTAAGAAGGCGGACTGTGTTAAGTGTGGGTCAGCTTTTAAGACAGAAGAGATACAGGAGCATATTATAAATTGTTGTTCCGTGGCTATTAAGATAGAGATTGAAGAAGTCGAAGAAAATTCTTGTTCAATAGATATATGA
- Protein Sequence
- MEGVSIKTEIEIEIKQENPENNEVNYINIDYINVKPEYVDVTNGLKTEPKEDFNCKELPAPPSENTDIITAGLQGKVYENGKVNRLLCNLCNKSFKNRANLKNHLKFVHSDEHSVECTQCFRTFKSHGHLSSHISSVHAEAQMAACQFCSKVFLNQKKLKNHIYYTHPQPTEQVNCAVCSKTYKSAYSLKIHMKLVHPDDGKSVPCPHCSKVFKVDMLLQRHIKWSHPLDGMIYKCQQCLKILPSLACYKKHIENTHDLTARATCELCKRVFKNKKSLDRHLKNVHNGKEVKPYVPSPFVCPVCERTFETKTSLFWHMQKLHSDTESMESSTYCEICQRNYSDNASLQRHFASVHSLETATCKICSKEFKSLVNLQSHMRITHAPPEANQICGVCQKTFKCALHLRMHTLAVHTDGEFTCDVCSKKFASLKYLTKHKKTHSNAREHPCQVCGKMFKSLFLANKHTRNVHNSVKCSFCGIKQTNIEEHLAKCVKKADCVKCGSAFKTEEIQEHIINCCSVAIKIEIEEVEENSCSIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702229;
- 90% Identity
- -
- 80% Identity
- -