Egla016217.1
Basic Information
- Insect
- Eugnorisma glareosa
- Gene Symbol
- -
- Assembly
- GCA_947578425.1
- Location
- OX387983.1:8459868-8465737[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00019 0.016 16.2 0.2 3 23 2 23 1 23 0.96 2 21 0.016 1.4 10.1 0.2 2 23 49 71 48 71 0.94 3 21 0.3 26 6.2 1.4 2 23 111 133 110 133 0.93 4 21 4.5 3.9e+02 2.4 5.5 2 23 160 182 159 182 0.96 5 21 0.58 50 5.2 6.4 1 23 211 233 211 233 0.96 6 21 0.15 13 7.1 1.3 1 21 237 257 237 260 0.94 7 21 0.22 19 6.6 0.7 3 22 267 286 265 286 0.94 8 21 2.5 2.1e+02 3.3 2.4 3 23 294 316 292 316 0.87 9 21 0.00045 0.039 15.0 2.0 1 23 323 346 323 346 0.96 10 21 2.1 1.8e+02 3.5 2.0 1 23 351 373 351 373 0.90 11 21 0.00014 0.012 16.7 2.0 3 23 427 448 426 448 0.98 12 21 1.1 94 4.4 0.1 2 23 473 495 472 495 0.93 13 21 0.00086 0.074 14.2 0.2 2 23 519 540 518 540 0.96 14 21 0.00033 0.029 15.5 0.8 1 21 544 564 544 565 0.96 15 21 0.81 70 4.8 0.1 1 23 606 629 606 629 0.94 16 21 0.42 36 5.7 0.4 2 23 655 677 654 677 0.95 17 21 0.0017 0.15 13.2 0.6 2 23 701 722 700 722 0.95 18 21 0.00025 0.021 15.9 0.0 1 23 726 749 726 749 0.97 19 21 0.45 39 5.6 0.5 1 23 753 776 753 776 0.97 20 21 0.00037 0.032 15.3 1.9 1 23 815 838 815 838 0.96 21 21 0.00078 0.067 14.3 0.4 1 23 848 871 848 871 0.95
Sequence Information
- Coding Sequence
- ATGTGCGTATATTGTGGGGAAAGTTACATCGACGCCACGCTATTCAGACAACACATGAAGAAGGAACATTTCAACTTCAAAGTCAAAACCGCATTCGCTCATATCTCATACGAAAGCTACCTCAAAATTGACATCACAGAAATGACCTGCAGGATTTGCTTTGAAACCTTTCCAAGACTTGAGGAAATCGCACGGCATTTAAACGAGAGACATACCGCCAAAATCAACTTTGACTTTCAATTAGAACCACATTTATGGGCGAAAGAGAACGCGGAGATTGTGTTGCGATATTCGACCGTGTACCCATTCAGATTGAGAGGGAAATCCATCACTTGCGTGTACTGCTGCGAAGGGTATGATGACCCCACACATTTCAGAAGGCACATCGATGTCCAGCACAAGCAATTCACAGTCGCTACAGCCTTCCACCACATGAGCACCCTAAAAGAATATCTCAAATGCGATATCACCAACTTAAAATGCAGACTCTGTCACCAACCCTGTGAAAAAATCGATGATTTCACTCAACATTTCAAAACCAAACACTTCAGAACACATGCAGATGTTGTGAAGAAACTAAAGCTTGAATACGATGTAGGGTTACAACCTTACAGATTGGTGAATAATAACTATTGTTGCTATCATTGTGGTAAGAAAATGCCCACTCTTATCAAACTGTGTCGACACACTATCGTGCATTACCAGCGGTACACCTGCGACACATGTGGACGCAATTACCTGTCCCTCGAAGCGTTAAGATACCACATTAAATGCATCCATGAAGTTACCAAACACCTATGCAGGAAATGCTGGACAGAATTCCCTACTCTGGAGCAGAAGAAAGAACATATAAGGACATCAAAGCAATGCTGGACTTTCTGCTGCATTGTCTGCGCGGAGAGATTCCAATCTTGGGAGCATAAGCAGAAACATTTACAAGCTGAACATGGCTACGAGAAAATAGTCTATAACTGTCCTGACTGTGAAGAAAAATTCACTTCGAGAAAGTATTTTTATACTCATTATAAGCTTGCTCACACTGATGAAGGCTTTCAATGTGCTTGTTGCGGTCTTAAATTTAACACCCAGAAACGGTTAGATGACCACTCACTCGGACATACTGGGACCACATTGGAAATTCACGGACGTAGTGAGACTGAGAATGAAACAAAAAAGAAAATTGTCCTTGTTTACCAGACGCCCCAAAGGCGAAACGCTGAAATCATACTAACTTATTCCACCGCGTACCCCTTTAAAACACGTTTTAGTCAAATACTATGCTCATACTGTCATGAGGAATTTAACACTCTCACTGATCTTAGATATCATATGAAAACAGAACATATAAACTCAGGTTTCAAAAACGTTTTCTACAGAGCAAGAGATAATTTAATCAAAATCGATATCACTAATCTAGAATGCAAAATTTGCTCAGAAAAAATTCAAGATGTCGACGGTCTTATGAGCCATTTGTACAGAGACCATAATAAGCCTGTAAAATTCAATGCCCGATATGGCGTTCTACCTTATAAGCAGAATTCTGATAACCATTGGACTTGTGTTTACTGTAACAAAATCTTCATTTCTTTCATAGCATTCAATCGGCACATTGTCACCCATTTTATGAATTACAGTTGCGATAAATGTGGAACAACCTTCGTCTCTGATTACGCTTTAAAAGACCATCATCGGCAAGTCAAGTGTTTTCGAACAGCTTATAAAGCTAGAAATGGTCGAGTCTTAAAACCTAGATCTAATGCCGAAATTATTCTCCAATGTTCCACAGCTAGTCCTTTCAGGACATGGAAAAGTAACTTCAATTGTGTTTTCTGTAGGGTCCAAAGTAACGATCCGAGCGGTCTTCGTATGCATGTCGTCACAATTCATGCAAACTACGACGTAAAAGCTGCTTTTTACAAGAAATTAGGGAAAGATTTCCTCAACGTTGATATCACAGATCTCCAATGTAAACTTTGCTTCATGTCTATAGATTCCTTCGACAGTTTGATTTACCATTTAAAGAACGATCATCAGCAACCGATAAATAGTGATGCTCAGATAGGAGTCCTACCTTTTAGACTAAACGACGGGTCGATATGGAAATGCACTATATGTCCGAACGAATTCAAAGATTTCGTCTCGTTAAAGAAACATACATCAGAACACTTCCAAAACTACGTTTGTGATACTTGTGGTGAAGGTTTTATCACAGAATCTGCTATGATAGCACACACTAAAATACCACACGAGAATAAATATAACTGCAGTCGATGTATAGCTACGTTCTCTTCGCTAGATGAAAGGAATATTCACGTGAAAACACAGCATACATCACTGCCTTACGTCTGTGTCTATTGCAAAGATAAACCACGCTTCGCAAACTGGGAGGTTCGCAAAAAACATTTGATGGCGGTTCATAATTATAAAACAGGAGCAGATAAATACGACTGCACGACGTGCCAAAAGTCTTTCAAGACGAGATCGGGGAAGTACAACCATATGGCAAGAGTGCATCGGATAAAAAAAGACACTGAGCTCAGCTACCCATGTCCAAGTTGTCCCAAGGCTTTTACGACTAAACTGTTCTTGGATAAACATGTGGCTAAAAAGCATTTTGATGTTTGA
- Protein Sequence
- MCVYCGESYIDATLFRQHMKKEHFNFKVKTAFAHISYESYLKIDITEMTCRICFETFPRLEEIARHLNERHTAKINFDFQLEPHLWAKENAEIVLRYSTVYPFRLRGKSITCVYCCEGYDDPTHFRRHIDVQHKQFTVATAFHHMSTLKEYLKCDITNLKCRLCHQPCEKIDDFTQHFKTKHFRTHADVVKKLKLEYDVGLQPYRLVNNNYCCYHCGKKMPTLIKLCRHTIVHYQRYTCDTCGRNYLSLEALRYHIKCIHEVTKHLCRKCWTEFPTLEQKKEHIRTSKQCWTFCCIVCAERFQSWEHKQKHLQAEHGYEKIVYNCPDCEEKFTSRKYFYTHYKLAHTDEGFQCACCGLKFNTQKRLDDHSLGHTGTTLEIHGRSETENETKKKIVLVYQTPQRRNAEIILTYSTAYPFKTRFSQILCSYCHEEFNTLTDLRYHMKTEHINSGFKNVFYRARDNLIKIDITNLECKICSEKIQDVDGLMSHLYRDHNKPVKFNARYGVLPYKQNSDNHWTCVYCNKIFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMSIDSFDSLIYHLKNDHQQPINSDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNIHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCTTCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPSCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01532458;
- 90% Identity
- iTF_01535273; iTF_00043856; iTF_01532458;
- 80% Identity
- -