Aseg010948.1
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000083.1:3635823-3645617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0017 0.16 13.5 0.3 2 23 31 53 30 53 0.95 2 19 0.034 3.1 9.4 0.2 3 23 80 101 78 101 0.94 3 19 1.2 1.1e+02 4.5 1.4 2 23 163 185 162 185 0.92 4 19 0.76 69 5.1 6.4 1 23 263 285 263 285 0.96 5 19 0.28 25 6.5 1.5 1 21 289 309 289 312 0.94 6 19 0.38 35 6.1 0.3 1 21 317 337 317 338 0.93 7 19 0.099 8.9 7.9 2.5 3 23 346 368 344 368 0.87 8 19 0.00058 0.052 15.0 1.5 1 23 375 398 375 398 0.95 9 19 2.8 2.5e+02 3.4 2.0 1 23 403 425 403 425 0.90 10 19 0.00034 0.031 15.7 1.8 3 23 479 500 478 500 0.98 11 19 0.0016 0.14 13.6 0.2 2 23 571 592 570 592 0.96 12 19 0.00043 0.039 15.4 0.8 1 21 596 616 596 617 0.96 13 19 1.1 96 4.7 0.1 1 23 658 681 658 681 0.94 14 19 1.6 1.4e+02 4.1 0.2 2 23 707 729 706 729 0.94 15 19 0.0022 0.2 13.1 0.6 2 23 753 774 752 774 0.95 16 19 0.00032 0.029 15.8 0.0 1 23 778 801 778 801 0.97 17 19 0.59 53 5.5 0.5 1 23 805 828 805 828 0.97 18 19 0.00049 0.044 15.2 1.9 1 23 867 890 867 890 0.96 19 19 0.001 0.092 14.2 0.4 1 23 900 923 900 923 0.95
Sequence Information
- Coding Sequence
- ATGCGTCCTTCGACCGTCGCGCGACGGAATGCTGAAACTATCGTCCTGAACGCCACAGTATATCCCTTTCGACTGCCGGACATTGCCCTTATCTGCGTATATTGTGCGGAGAGTTACACAGATGCCAAGCTTTTTAGACAGCACATGAAGAAAGAACACTTCAACTTTAAAGTCAAGAACGCATTCGTTCACATCTCCTCAGAAAGCTACCTCAAAATTGATATCACAGAAATGAATTGCAGGATTTGCTTTGAATCGTTTCCGAGGCTTGAGGAAATAGCGAGGCATTTGAATGAGAGACATGCTGCCAAAATTGATTTTGACTTCCAATTAGGACTGCATCCATACAAATTCGCCCAGGATAAGCTTCTGTGCGGGGTTTGTGATCTGAACTTCTCTGAACCACATATATGGGCGAAAGAGAACGCGGAGATTGTGTTGCGATATTCGACCGTATATCCATTCAGATTGAGAGGAAAATCCATCACTTGCGTCTACTGCTGTGAAGGGTATGATGACCCCACGCATTTCAGGAGGCACGTAGACGTCCAACATAAGCAATTCACCGTCGCAACCGCTTTCCACCACATGAGCAGTCTAAAAGAATATCTCAAATGTGACATCACCAATCTTAAATGCAGACTATGTTATCACCCCTGTGAAAAAATCGAAGATTTCGCCgaacattttaaaagtaaacacgTCAAAACCCATGCAGATGTTGTGAAGAAACTGAGGCTTGAATATGACGTAGGTTTGCAACCATACAGATTGGTGAATAATAATTACTGCTGCTATCATTGTGGCAAGAAAATGCCCACCCTCATCAAACTGTGTCGACACACGATCGTGCATTACCAACGATTCACATGCGATACATGTGGACGAAACTACTTATCCCTCGAAGCGTTAAAATATCACATCAAATGCATTCATGAAGTTACGAAACATGTCTGCAGGAAATGCTGGACAGAATTCCCAACGTCAGAGATGAAGAAAGAACATGTTAGGGCTTCAAAACCATGTTGGACATTCTGCTGCATTGTTTGTGGTGAAAGGTTCCAATCCTGGGAACATAAACAGAAACATCTACAAGCCGAACATGGCTATGAAAAGATAGTCTACGACTGTCCCGATTGTGAAGAAAAATTCACTTCCAGAAAGTATTTTTATACTCATTATAAGCTCGCTCATACTGATGAAGGTTTCCAATGCGCCTGCTGTGGTCTTAAATTCAACACCCAAAAACGTTTAGATGACCATTCGTTAGGACATACTGggaCCACATTGGAAATTCACGGACGTAGTGAAACtgagaaagaaacaaaaaagaaaattgtcctTGTTTACCAGACGCCGCAAAGGCGGAACGCTGAAATCATACTAACTTATTCCACTGCTTACCCTTTTAAAACACGTTTTAGTCAAATACTCTGTTCGTACTGCCACGAAGAATTTAATACTCTTATGGATCTAAGATATCACATGAAAACAGAGCATAAAAATTCCGGTTTCAAAAACGTTTTCTACAGGGCACGAGACAATTTAATCAAAATAGATATTACGAATTTAGAATGTAAAATATGCGCGGAAGAAATCCAAGATGTCGACGGTCTTATGAGCCATTTGTATAGGGAGCATAATAAGCCTGTAAAATTCAATGCCCGATATGGGGTTTTACCTTATAAACAGAATTCTGACAACCATTGGTCTTGCGTATactgtaataaaatcttcatTTCCTTCATAGCGTTCAATAGGCATATTGTCACCCATTTCATGAATTATAGCTGTGATAAATGCGGTACTACTTTTGTCTCAGATTACGCTTTGAAAGACCACCATCGGCAAGTGAAATGCTTCCGAACAGCTTACAAAGCGAGAAATGGACGGGTATTAAAGCCTAGATCTAATGCCGAAATAATTCTACAATGTTCCACAGCAAGTCCTTTCAGAACATGGAAAAGTAACTTCAATTGTGTATTCTGTAGAGTCCAAAGTAATGACCCAAGTGGGCTTCGAATGCACGTAGTCACTATACACGCGAATTACGACGTTAAAGCAGCTTTTTACAAGAAGTTAGGGAAAGATTTCCTTAACGTTGATATCACAGATCTTCAATGTAAATTATGCTTTATGCCCATAGACTCCTTCGACAGTTTGATTTACCATCTGAAAAACGATCACCAACAACCGATAAATTCTGACGCCCAGATCGGAGTCCTACCTTTTAGACTCAACGATGGTTCAATATGGAAATGCACGATATGTCCCAATGAATTCAAAGATTTTGTCAGTCTAAAGAAACATACTTCAGAACACTTCCAGAATTACGTCTGTGATACATGTGGGGAAGGTTTTATCACAGAATCTGCAATGATAGCTCATACGAAAATACCACACGAGAACAAATATAATTGCAGTCGATGTATAGCAACGTTCTCATCTCTAGATGAAAGAAATATACACGTCAAAACACAACATACTTCGCTCCCTTACGTCTGTGTCTATTGCAAGGATAAACCGCGCTTTGCGAACTGGGAGGTTCGCAAAAAACATTTGATGGCTGTCCATAACTATAAGACAGGAGCTGATAAATACGACTGTACGACGTGCCAAAAGTCTTTCAAGACGAGATCGGGGAAGTACAACCATATGGCGAGGGTGCATCGGATAAAAAAAGATACAGAGCTCAGCTACCCTTGCCCGAGTTGTCCGAAAGCTTTTACGACGAAACTGTTCTTAGATAAACATGTGGCTAAAAAGCATTTTGATGTTTGA
- Protein Sequence
- MRPSTVARRNAETIVLNATVYPFRLPDIALICVYCAESYTDAKLFRQHMKKEHFNFKVKNAFVHISSESYLKIDITEMNCRICFESFPRLEEIARHLNERHAAKIDFDFQLGLHPYKFAQDKLLCGVCDLNFSEPHIWAKENAEIVLRYSTVYPFRLRGKSITCVYCCEGYDDPTHFRRHVDVQHKQFTVATAFHHMSSLKEYLKCDITNLKCRLCYHPCEKIEDFAEHFKSKHVKTHADVVKKLRLEYDVGLQPYRLVNNNYCCYHCGKKMPTLIKLCRHTIVHYQRFTCDTCGRNYLSLEALKYHIKCIHEVTKHVCRKCWTEFPTSEMKKEHVRASKPCWTFCCIVCGERFQSWEHKQKHLQAEHGYEKIVYDCPDCEEKFTSRKYFYTHYKLAHTDEGFQCACCGLKFNTQKRLDDHSLGHTGTTLEIHGRSETEKETKKKIVLVYQTPQRRNAEIILTYSTAYPFKTRFSQILCSYCHEEFNTLMDLRYHMKTEHKNSGFKNVFYRARDNLIKIDITNLECKICAEEIQDVDGLMSHLYREHNKPVKFNARYGVLPYKQNSDNHWSCVYCNKIFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMPIDSFDSLIYHLKNDHQQPINSDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNIHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCTTCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPSCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01532458;
- 90% Identity
- iTF_00685734;
- 80% Identity
- -