Xxan066094.3
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990671.1:7176304-7181196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.94 1.9e+02 4.8 7.1 1 23 83 105 83 105 0.97 2 17 0.22 43 6.8 1.8 1 21 109 129 109 132 0.94 3 17 1.2 2.5e+02 4.4 0.5 3 21 139 157 137 158 0.93 4 17 2.4 4.8e+02 3.5 2.4 3 23 166 188 164 188 0.87 5 17 0.024 4.9 9.8 1.0 1 23 195 218 195 218 0.91 6 17 2.1 4.1e+02 3.7 2.0 1 23 223 245 223 245 0.90 7 17 0.0005 0.099 15.1 1.8 3 23 299 320 298 320 0.98 8 17 2 3.9e+02 3.8 0.0 2 23 345 367 344 367 0.92 9 17 0.00024 0.048 16.1 0.4 2 23 391 412 390 412 0.96 10 17 0.00032 0.065 15.7 0.8 1 21 416 436 416 437 0.96 11 17 0.79 1.6e+02 5.0 0.1 1 23 478 501 478 501 0.94 12 17 1.2 2.4e+02 4.5 0.2 2 23 527 549 526 549 0.94 13 17 0.0017 0.33 13.5 0.6 2 23 573 594 572 594 0.95 14 17 0.00024 0.048 16.1 0.0 1 23 598 621 598 621 0.97 15 17 0.32 64 6.3 0.6 1 23 625 648 625 648 0.97 16 17 0.00037 0.073 15.5 1.9 1 23 687 710 687 710 0.96 17 17 0.005 0.99 12.0 1.2 1 20 720 739 720 744 0.91
Sequence Information
- Coding Sequence
- ATGGATGTTCAGCACAAGCAATTCACAGTCGCTACAGCCTTCCACCACATGAGCACCCTAAAAGAATATCTAAAATGCGATATCACCAACTTAAAATGCAGACTGTGTTACCATCCTTGTGAAAAAATCGATGATTTCACCCAACATTTCATAACCAAACACATCAGAACACATGCAGATGTCGTGAAGAAACTGAAGCTTGAATATGACGTAGGGTTACAACCTTATAGATTGGTGAATAACAACTATTGTTGCTATCATTGTGGTAAGAAAATGCCCACTCTTATCAAACTCTGTAGACACACTATCTCGCATTACCAGCGGTACACATGTGATACATGTGGACGCAACTACCTATCCCTAGAAGCGTTGAGATACCACATCAAATGCACCCATGAAGTTACTAAACACCTCTGCAGGAAATGCTGGACAGAGTTCCCTACTCTAGAGAAGAAGAAAGAACACATAAGGGCATCAAAGCAATGCTGGACTTTCTGCTGCATTGTCTGCGCGGAGAGATTCCAATCTTGGGAGCATAAGCAGAAACATTTACAGGCTGAACATGGCTACGAACAAATAGTCTATGATTGCCCCGACTGTGAAGAAAAATTCACTTCGAGGAAAATTTTTTATACTCATTATAAGCTCGCTCACACTGATGAAGGCTTTCAATGTGCTTGCTGCGGTCTCAAGTTTAACACCCAGAAACGGTTAGATGATCATTCGCTCGGACACACTGggacCACATTGGAAATTCACGGACGTAGTGAGACTGAGaatgaaacaaaaaagaaaattgtcCTTGTTTACCAGACGCCCCAAAGGCGAAACGCTGAAATCATACTAACTTATTCCACCGCGTACCCTTTTAAAACTCGTTTTAGTCAAATCCTATGCTCGTACTGCCATGAGGAATATAACACTCTCACTGACCTCAGATATCATATGAAAACAGAACATATAAACTCAGGTTTCAAAAACGTTTTCTACAGAGCCAGGGATAATTTAATCAAAATCGATATTACTAATCTAGAATGTAAAATTTGCTCAGAAGAAATTCAAGATGTCGATGGTCTAATGAGCCATTTGTATAGAGAACATAATAAGCCTGTAAAATTTAATGCCCGGTATGGCGTTCTACCTTATAAGCAGAATTCTGATAACCATTGGACTTGCGTTTACTGTAACAAAACCTTCATTTCTTTCATAGCATTTAATCGGCACATTGTCACCCATTTCATGAATTATAGTTGTGATAAATGTGGAACTACCTTCGTCTCTGATTACGCTTTAAAAGACCATCATCGGCAAGTCAAGTGCTTTCGAACAGCTTATAAAGCTAGAAATGGTCGAGTCTTAAAACCTAGGTCTAATGCCGAAATTATTCTACAATGTTCCACAGCTAGTCCTTTCAGGACATGGAAAAGTAACTTCAATTGCGTTTTCTGTAGGGTTCAAAGTAACGATCCGAGCGGTCTTCGTATGCATGTCGTCACAATTCATGCGAATTACGACGTTAAAGCTGCTTTTTACAAGAAGTTAGGGAAAGATTTCCTCAACGTTGATATCACAGATCTCCAATGTAAGCTATGTTTCATGCCTATAGATTCCTTCGACAGTTTGATTTACCATTTAAAGAACGATCATCAGCAACCAATAAACAGTGATGCCCAGATAGGAGTCCTACCTTTTAGACTGAACGATGGGTCGATATGGAAATGCACGATATGTCCGAACGAATTCAAAGATTTCGTCTCATTAAAGAAACATACATCAGAACACTTCCAAAACTACGTTTGTGATACTTGCGGTGAAGGTTTTATCACAGAATCTGCTATGATAGCACACACTAAAATACCACACGAGAATAAATATAACTGCAGTCGATGTATAGCCACGTTCTCTACGCTTGATGAAAGGAATATTCATGTGAAAACACAGCATACATCACTGCCTTACGTCTGTGTCTATTGCAAAGATAAACCACGCTTCGCAAACTGGGAGGTTCGCAAAAAACATTTGATGGCGGTTCATAATTATAAAACGGGAGCAGATAAATACGATTGCACGACGTGCCAAAAGTCTTTCAAGACGAGATCGGGGAAGTACAACCACATGGCAAGAGTGCATCGGATTAAAAAAGACACTGAGCTCAGCTACCCGTGTCCAAGTTGTCCTAAGGCTTTTACGACTAAACTGTTCTTGGATAAACATCATATCGCGAAAAAGCATTTCCATGTATGA
- Protein Sequence
- MDVQHKQFTVATAFHHMSTLKEYLKCDITNLKCRLCYHPCEKIDDFTQHFITKHIRTHADVVKKLKLEYDVGLQPYRLVNNNYCCYHCGKKMPTLIKLCRHTISHYQRYTCDTCGRNYLSLEALRYHIKCTHEVTKHLCRKCWTEFPTLEKKKEHIRASKQCWTFCCIVCAERFQSWEHKQKHLQAEHGYEQIVYDCPDCEEKFTSRKIFYTHYKLAHTDEGFQCACCGLKFNTQKRLDDHSLGHTGTTLEIHGRSETENETKKKIVLVYQTPQRRNAEIILTYSTAYPFKTRFSQILCSYCHEEYNTLTDLRYHMKTEHINSGFKNVFYRARDNLIKIDITNLECKICSEEIQDVDGLMSHLYREHNKPVKFNARYGVLPYKQNSDNHWTCVYCNKTFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMPIDSFDSLIYHLKNDHQQPINSDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSTLDERNIHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCTTCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPSCPKAFTTKLFLDKHHIAKKHFHV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01532458;
- 90% Identity
- iTF_00685734;
- 80% Identity
- -