Elac003527.1
Basic Information
- Insect
- Eudonia lacustrata
- Gene Symbol
- -
- Assembly
- GCA_947562085.1
- Location
- OX387333.1:2315359-2318895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7e-06 0.00035 21.7 0.6 2 23 101 123 100 123 0.95 2 13 9.3e-05 0.012 16.9 1.5 2 23 131 153 130 153 0.96 3 13 0.0051 0.65 11.4 3.1 2 23 160 182 159 182 0.91 4 13 4.4e-06 0.00057 21.0 0.5 3 23 191 212 189 212 0.96 5 13 0.00017 0.021 16.1 0.1 3 23 220 241 218 241 0.94 6 13 0.0013 0.17 13.3 1.9 1 23 248 271 248 271 0.97 7 13 8.7e-05 0.011 17.0 5.9 2 23 277 299 276 299 0.96 8 13 0.00012 0.016 16.5 0.5 3 23 316 337 314 337 0.94 9 13 0.0029 0.38 12.2 1.1 2 23 345 367 344 367 0.96 10 13 5.4e-06 0.0007 20.8 3.7 2 23 373 395 373 395 0.97 11 13 0.0079 1 10.8 3.7 2 23 403 425 402 425 0.91 12 13 1.5e-05 0.002 19.3 3.9 2 23 432 453 431 453 0.97 13 13 7.2e-05 0.0093 17.2 1.8 1 23 458 481 458 481 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTAGTTGTAGAAGTGGAACCGTACATTGAAGATGATGAAACAAAACATAACTTTGATAGCAGTATAATTACTAATGAAAGCCCCAGTACCGATGGTATTGTTAAAACAGAACAAAATACAACAGGCAATGTTAAAATAGAACGGAGCACATCTGTTCATAGCGACAAACCTTTGAATGACGTTTTAGGGAATTCCGGAACAGATTTAGATGATAATGACGATGCCAGTATCACACCTGCTAGAACAATAAAGTTTGAAGGTAAAGTCTACGCAAACGGCAAGAGGAATCGTCTGCAATGTCCTCAATGCGATACGACGTTCAAAAACCGGGCGAACCTTAAGGGACACCTCAAATACATACACGCGACAGAGGACGAAACAAAGGAATGCGACATCTGCTACCGAACGTTTAAATCGCTGGTGCATCTGCGTTCGCACGTGAACTCTATCCATGCCAAAGACAAAGAGGTCACATGCGATCATTGTGGCAAAAATTTTTTGAACAAAAAGAAGTTGACCAATCACGTTTTCTACACACATCCGAAGCCTGAGGAAGACGTCATATGCGGGGTATGCTCCAAAGTGTTTAAAACGAAATACAGATTAAAACTACACATACGTACAGTACATCCGGAAGGGAAAAACGTTAATTGCCCTGACTGCGCTAAAGAGTTTAAATCGGAAATGCTACTCCAAAGACATGTGAAATGGGCTCACCCGTCCGACGGCATGTCTTACCGATGTCAAGACTGCGGTAGAGTTCTCCCATCTATCCAATGCTTCAAGAAACATCTGAAAAACGTGCACGGCTTGGGTAATATCAAATGTGATCACTGCGACAAGGTATTTCAAACGAAAAACACTTTGCATCGGCATGTGAAAAGGTTCCATGAAGGTGTTATAGTAGAGAAGAAGGAGTACAAAAGTGGCCAGTTGGACTGTGATAAATGTGACAAGAAGTTTAGTACAGTTACCGCTTTAACATGGCATAAAGAGAGGTTGCACTCAGATAACAAGTTGTCTACAACATGCCAGTTGTGTTTAAAAGAGTTTGGTGATCACAACGGTTTGAAACGGCATCTGGAAACGGTGCATTCCATGGAGACTGCCACATGCCATATATGCTCAAAGACTTTCAAGTCCTACTTGAATTTGCAGAGACATTTGCGTGTAACCCACGCGCCGCCGGAAGCTGCTCAAACTTGCGATATATGTAAAAAGACGTTTAAATGCTCGATGCACTTGAAAATTCATATATACGCAGTGCATCCTAAAGAGGGTAGGGTCAGTTGTCATATCTGCAAGAAAGAGTTCTCCTCCAAAAAGTATTTATTAAAACACGAAAAAACTCATTACGGCAAAGAGTATGAGTGCACTATATGCGGTAACTTTTTTAAAACTATGCACGATGTCAATAGGCATGTACGGAGAGTTCATACGAAGGACAAGATGAGAGTGATCGAGAGAAAGCGAAATGATAGGACCTGTGGCCATGCCAGGATGAGCGCTCATTGGGTTCCCATGGCCTCGTCAGGCTCCACCATGCCGGCGTCCGATGCGTCCTCCTCAGATGAGGACAACGCGATGGTCGCCGGTTTGCTGGTTCCAAGGTGA
- Protein Sequence
- MEVVVEVEPYIEDDETKHNFDSSIITNESPSTDGIVKTEQNTTGNVKIERSTSVHSDKPLNDVLGNSGTDLDDNDDASITPARTIKFEGKVYANGKRNRLQCPQCDTTFKNRANLKGHLKYIHATEDETKECDICYRTFKSLVHLRSHVNSIHAKDKEVTCDHCGKNFLNKKKLTNHVFYTHPKPEEDVICGVCSKVFKTKYRLKLHIRTVHPEGKNVNCPDCAKEFKSEMLLQRHVKWAHPSDGMSYRCQDCGRVLPSIQCFKKHLKNVHGLGNIKCDHCDKVFQTKNTLHRHVKRFHEGVIVEKKEYKSGQLDCDKCDKKFSTVTALTWHKERLHSDNKLSTTCQLCLKEFGDHNGLKRHLETVHSMETATCHICSKTFKSYLNLQRHLRVTHAPPEAAQTCDICKKTFKCSMHLKIHIYAVHPKEGRVSCHICKKEFSSKKYLLKHEKTHYGKEYECTICGNFFKTMHDVNRHVRRVHTKDKMRVIERKRNDRTCGHARMSAHWVPMASSGSTMPASDASSSDEDNAMVAGLLVPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683553; iTF_00682668; iTF_01335253;
- 90% Identity
- iTF_00683553;
- 80% Identity
- -