Basic Information

Insect: Scoparia ambigualis
Gene Symbol: -
Assembly: GCA_963921215.1
Location: OY992525.1:1293881-1295545[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.3e-06 0.0011 21.6 0.7 2 23 114 136 113 136 0.95

2 14 0.00031 0.075 15.8 1.6 2 23 144 166 143 166 0.95

3 14 0.015 3.7 10.4 2.6 2 23 173 195 172 195 0.92

4 14 4.6e-05 0.011 18.4 0.9 3 23 204 225 202 225 0.96

5 14 3.2e-05 0.0078 18.9 0.1 3 23 233 254 231 254 0.94

6 14 0.002 0.49 13.2 1.9 1 23 261 284 261 284 0.97

7 14 0.0026 0.64 12.9 6.2 2 23 290 312 289 312 0.96

8 14 0.00019 0.046 16.4 0.4 3 23 329 350 327 350 0.94

9 14 0.0079 1.9 11.3 1.1 3 23 359 380 357 380 0.96

10 14 3.8e-06 0.00093 21.8 1.8 2 23 386 408 386 408 0.97

11 14 0.015 3.6 10.5 3.7 2 23 416 438 416 438 0.91

12 14 1.1e-05 0.0028 20.3 1.6 2 23 445 466 444 466 0.97

13 14 2.6e-05 0.0063 19.2 2.3 1 23 471 494 471 494 0.98

14 14 1.5 3.7e+02 4.2 0.8 2 21 510 529 509 530 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.3e-06	0.0011	21.6	0.7	2	23	114	136	113	136	0.95
2	14	0.00031	0.075	15.8	1.6	2	23	144	166	143	166	0.95
3	14	0.015	3.7	10.4	2.6	2	23	173	195	172	195	0.92
4	14	4.6e-05	0.011	18.4	0.9	3	23	204	225	202	225	0.96
5	14	3.2e-05	0.0078	18.9	0.1	3	23	233	254	231	254	0.94
6	14	0.002	0.49	13.2	1.9	1	23	261	284	261	284	0.97
7	14	0.0026	0.64	12.9	6.2	2	23	290	312	289	312	0.96
8	14	0.00019	0.046	16.4	0.4	3	23	329	350	327	350	0.94
9	14	0.0079	1.9	11.3	1.1	3	23	359	380	357	380	0.96
10	14	3.8e-06	0.00093	21.8	1.8	2	23	386	408	386	408	0.97
11	14	0.015	3.6	10.5	3.7	2	23	416	438	416	438	0.91
12	14	1.1e-05	0.0028	20.3	1.6	2	23	445	466	444	466	0.97
13	14	2.6e-05	0.0063	19.2	2.3	1	23	471	494	471	494	0.98
14	14	1.5	3.7e+02	4.2	0.8	2	21	510	529	509	530	0.91

Sequence Information

Coding Sequence: ATGGAGGAAGAAACAGAGAAAGTGTTCATAAAACAAGAGACCATAAGCGAATTCACAATGGAGGTGCTCGTAGAAGTTGAGCCGTACAACGAAGACGATGAAACAAAACACAAGTTCGTCGCCAACCGGGAGACTGGAGAAAACACCGATGGTTTCGTTAAAAAGGATGACTACATCGCAACCATCGTTAAAGAAGAACAGAGCACGTCCTATACAGACGACTCGACAGACGACGTATCAGAGAGCACAGTAACAGATTTGGACCATAATGAGGTGAAACCTGGTAGAACGATTAATTTCGAAGGCCAAGTTTACGCTAATGGCAAAAGGAATCGTCTGAAATGCCCTCAATGTGATACTACGTTCAAAAACCGTGCCAACCTCAAAGGTCATCTCAAATATATACATGCTACAGAAGACGAAGCAAAAGAGTGCGATATATGCTTTCGCACGTTCAAATCGCTGGTGCATTTGCGTTCGCACGCGAATTCTGTTCACGTGAACGTTAAGGAAGTCACGTGCGACCACTGCGGCAAGAATTTTCTCAACAAAAAGAAATTGGACAACCACATTTTCTACACGCACCCAAAGCAAGAAGAAGACGTGATATGTGGGGTATGCTCCAAAGTGTTTAAGACGGAACACCGGTTGAAACTTCACATACGGACAGTACATCCGGAAGGGAAGGACGTTAATTGCCCGGTGTGTGATAAAGAGTTTAAGTCGGAGATGCTTCTACAAAGACATGTGAAGTGGGCGCATCCGCCTGACGGTATGACTTATAGATGCCAAGACTGTGGTCGAGTACTCCCGTCTATACAGTGCTTcaagaaacatttgaaaaaCGTCCACGGTTTAGGCAATATTAAGTGCGAGCATTGTGATAAACTGTTTCAAACGAAAAACACTTTACATCGTCACGTGAAAAGATTTCATGAAGGCGTGGTAGTAGAGAAGAAACAGTATAAGAGTGGTCAGATCGACTGCGATAAATGTGACAAGAAATTTAGCACGGTCACAGCTTTGACTTGGCACAAGGAGAGGTTGCATTCAGATAACAAGCTTAATACAAATTGCCAGTTATGCTTGAAAGAGTTCGGTGATCACAACGGCTTGAAACGCCACTTAGAAACCGTACATTCTATGGAGACAGCCACCTGCAATATATGCTCGAAAACTTTCAAGTCTTACCTGAATCTGCAGAGGCACTTGCGTGTGACACACGCGCCTCCCGAAGCGGCGGAGACATGTGACATATGCAAGAAAACGTTTAAATGCTCGATGCATCTCAAGATTCATATTTACGCGGTGCATCCCAAAGAGGGGAGGGTTAGCTGTGACATTTGCAAGAAGGAGTTCTCCTCCAAAAAGTACTTGTTGAAACACGAGAAAACTCATTACAGCAAGGAGTACGAGTGCACGATATGCGGAAATTTCTTTAAAACCAGACATGACGTGAACAGACATGTGAGGAGGGTCCATACGAAGGATAAAATAAGAGTTCTGGAGCGCAAGAGAAACGATAAAAGCTGTTTGCAGTGTGGGTTGTATTTTCATGATGACCTCTCGTTGCATAAGCATATAGCCACTTGTGGGTATGAAGAGCCACATACAGCTTTTATTAAAGTGGAGATAGAACAAATAAGTGATGACGTAAACAAGTGA
Protein Sequence: MEEETEKVFIKQETISEFTMEVLVEVEPYNEDDETKHKFVANRETGENTDGFVKKDDYIATIVKEEQSTSYTDDSTDDVSESTVTDLDHNEVKPGRTINFEGQVYANGKRNRLKCPQCDTTFKNRANLKGHLKYIHATEDEAKECDICFRTFKSLVHLRSHANSVHVNVKEVTCDHCGKNFLNKKKLDNHIFYTHPKQEEDVICGVCSKVFKTEHRLKLHIRTVHPEGKDVNCPVCDKEFKSEMLLQRHVKWAHPPDGMTYRCQDCGRVLPSIQCFKKHLKNVHGLGNIKCEHCDKLFQTKNTLHRHVKRFHEGVVVEKKQYKSGQIDCDKCDKKFSTVTALTWHKERLHSDNKLNTNCQLCLKEFGDHNGLKRHLETVHSMETATCNICSKTFKSYLNLQRHLRVTHAPPEAAETCDICKKTFKCSMHLKIHIYAVHPKEGRVSCDICKKEFSSKKYLLKHEKTHYSKEYECTICGNFFKTRHDVNRHVRRVHTKDKIRVLERKRNDKSCLQCGLYFHDDLSLHKHIATCGYEEPHTAFIKVEIEQISDDVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00681809;
90% Identity: -
80% Identity: -