Basic Information

Gene Symbol
JARID2
Assembly
GCA_947049305.1
Location
CAMRIP010000134.1:506025-521345[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-21 4.2e-18 66.3 0.0 6 89 1672 1753 1668 1753 0.92

Sequence Information

Coding Sequence
ATGGTGGTTTCCAAAGACTCGAAAAGAAAGCGCAAGGAGTCCCCGCTCATTGAATCGTCACCAGAAATgccaaaaaggACAAAAGTGCAAGCACAAAGAAAATTTGCACAAGGACAAAGTGCACCAACTTCATCATACAGTGCTGCTTTGGCTTCATCTTCAACTGCGGCGGCTGCTGTCAGTACATCATTGGGCAATTCTGCAACTCAAGAAAATCGTGAACCACCAACCGAAATTTTACCCAACAAAAGGCCAAAAACTGAAGACTTTTTAACATTCCTTTGCTTTCGTGGAACATCGGCACTGCCTGcacatttagattttttaaatcaaaatacatCCCAGGCTCCAAAAGATGAATCTCAAGATACAAATGAAAAATCGACCGAAGATACAGAGTCGTCACCAACGACGAAAGCAAACGTGCAAAAATCTACAAGATCATCGTCTACCAAAAAGAAGGACAAATGTGCAACGGTTGATGAAAGCTCCACATCGACCCTAAGTGTAAAGAAAACTGAAACCAAAAAATCTATAGCAAAGAAAAATGAAGAAGTGAAAGATGAAAAAGTTATGGCATTCGCGGTCAGAAAGAGAGCAGAACAATTACCCGAAGGTAATCGTCGTGGTAGACCtccgaaagaaaaattaaataaatccaaTGACGGTAATCGGCGTTCCGTTAGAAATAAGGATAATAACAAATCTTTTGCAGAGCTAGACGACAATGAATCTGAAACTAATGACGTAGAAATAGGCTCTGCAGACTATGGAcaagatttaaataaatctgaCAAAACCCCACAGCAAAAAGGCAAACGAGGAAAACCCGCAAACTCAGCTAAGAAAAAGCTAGAGACAAGTGTAACAGCTTCTACACGTGAAGTTCAAGGCCCACCGATTGAAAAACAAGGACCAGAAGAACGCGTCCCACAAGCAAAACCAACACAGGCCAAAGAAAAACCCGTAATTAAAAGACCACGCCAAAAAGAAGCTCCCATATTTGTTCCGTCACCAGAACCAACAGGTGGAGGAAGAATGACACGACAACGGGCATTTTTTGAGCCGGTAAAAGTTATACGTcacgaagaaaaagaagaagaagttgTGGAATTGAAAAAAGAGccggaagaaataaaaaataaagaacctTCTCCGCCGCCAAAACCCGTGTTCGATAAACCAGAAGAAGACACTGCTCCAAACAGagatgtttttgatttttcttcagaAGACGAACAACCATTGGCAAAAgctataaaacttaaaaattcaaaagaagtcTCTGCAAAAAAGTCATCAccaaaaaagcaacaaaaaataactgcCCAAGATAAAGATGACTTTCAAAGTAAAGACGACATTTCACCAAAAACCAAACCAGTCGAAGACGCAAAAGAGAAAGTAATTGAAAAGCCTGCGAAAAGCGAAAATATAATTGATATAACGACTGAAAGACAAGAAGACAAGAAGGTTCTacctgagaaaattaaaaagacacCTGGTCGAAAGcccaaaaaaaagataattgaaGAACAGAGTGttatttctgaaaaaagttcaaaacaCTCAATCGAACAACCCAGACAACAAAAACAGGATAATGAAAATGATTTAAAGTTGttgcaaacaacaacaacaacaacaacgacaacaGCAACAGTAGCAGCCACCAGGCACAAGAAAAAGTCAACAGCAGAAATCCCAGAAATTATCGAACCTGAAATTCGAAGCACACGACCAACGAGGAAGACTAAAGAAGCTGCGACTATTTATATGGGCATTATTGGGCAAAAATTGCAATTAGATGAGTTCGACGACGACGAAATGTCATTAAGCAGTTTTCCAGATCTGCCCAACGTaaaagaaatggaaaaaatggaaaccgaactaaaaaagaacgtccatcaaaacaaacaattacAAAACCAGGTTCAGGCCCAGACAAATCTTGCAACTGATAAATCCGAACAGAAACCAACATCAcccataaaaaaagaaattgaaaagccTCCAGCAAAAAGGGGTCGTCCGCCAAAAAGCGCCAATTCAAAAGCTGctaacaaacaaaaacttacaAAGCCTCCTCAAATAGAAGGAATGCTTCGAAAAAGGGAGGACCCAAAACCACAGGAAataaaagataatgaaaaagaaGATGATGAAGATTTCCTACTCAATGAAGAAGTTAACGAGACCAAGAGAAAACTCGAAAAAAGCTTTAGTGATTCGGACGACGAACCACTGGCTATTAAATTAACAAAGGGCTCCGacgattattcaaaaaaatcggATAATCCGCCAATAATGATGCCAACCATGACGCCTAATGAAGAGCGAGCTAAAGAACCACGACCAGCTCCAAAAATGTTGAACCTTCTGCCGATAACAGCACCAGCACCTACGTTACAATGCAATGTATCAACATCGTCACAAGTGAATTCCGCTCCACTCAAGTTAGATGATAAACCAAAAATGCCCACTCCTTTATCCGCTCCTGTCACTGCATTTATACCAAGACAACCCACACTTAAAACTCCTCCAGCTCAAACTACCATTCCTCCTATACAGCCAACGATTAAATACCAAACACCACCAACAACATATCCACCCCCGATCGAAGCATATCCGTCTCCAAAAATCAATCCAAACTTTCTCACCCCAAAGTTCGATCGAAATATAGATCGGCGCATTGTTTGTCTTGATGGCTCCTCTTCACTCTCAACCATGCAAAGACCAAGTAGCAGTTTTCCTTCACCGTCTCCAGTGAAATATGATATGTCGACTCCGAAAACGCCTAGTACTTCGAATGCAAAGATTCCTGTGGTGCCATCAACAACATCGTCTAATGCGCAACCTTCATCGGATCCGTTAAAAGACGAAATCGGAAGCATTCTTGCAGCAAATCTGATGCCAAGCAAAGAAGAATCTGGTAAAATATTTGGTATCGCAAGTGTCAGTTTGGCACAAAGTTCTGGGCCCGACAACACAAAGTGCACCTTAGGTAAATGTGGTTCAATCCATAAGCCTGTACTTGGCCCAGTCGTTCCAACTGAATCTTATCTCGGCGAACAGCTTTCAAGTAAGGAAAGGCGAAAAGCTAAAGTAAACATGACACATGAACAGATTCAAAAATGGTTGATAGAATGTTCTTCAAATCCGGATGAGATTCAAGATGACTTGGACGATGATTTTGATGACAATCTTCGCCCAAACATTTATGCAACTACGCCTCCGCCAACAAGAGATGACAAAGAAAGCACTTCATTTAGTTCCTCTTCAAAAACCACCAGAGATTTGGGAAAAAGTGAAAGCGCCTGGTCAGGTAAAGGCCCTTCTTTAAAAGCTACGCCCGTTGTATTACCCAAAGATGATCAAAGACCAGAAGAATGTTCTTTCTCCTCAGATGCAGGCAATAAAGAACTAAAAGAAGGTCCCAAGGACTACCAGACACAAAAGAACACAGCTATGAATAAGAAAAATGATACAGTCACCAAAtctaaagaaaaaatgaaaattgacaaAACCAAGCAAGAGAAGGAAGTCAAGAAAGTTCAGGATAAAGTGTCCAAGGAAGGGACTGGTCCTCAAAAAGGAGTCAAACAGCTTAACTCGGCAACTACAACTCCTGCTGCTACAACGTCTTCTCCACGACAGCAAAAAAAATCAGACGAAAGTAAAAAGGCTACAGCAATTAACTCGCCCACGACTAAAGCAGGTACGGCAGCCACATCAAATGCAGCCAAAACTCCAAAACGTACTACAGTTTATAATTCAAAGCTGAAGGAGTCCACAACAACAAGTCATAAGAAGAAAACTCCATTTTCTTACACTTTCGGTGCATTTTCAGCAGATAacgaaaaaagtatttattccTTTGACAAAGAGGAGGACGACGACTCGAAGCTTCCTTTATCTAAACCATTCCGGCGGCAAAGTCGTCGCGAATCTCATACAGAGGATTCCAATCAACTTGATCAAACCGCGTTGCATAAAAATACAACCACCGTCGAGAAAAAACATGACAACAAATCACAAGTCAATGTTCCTGTAACAATGACTACGGAGAAAAACAAGAATGCAAAAGGAAGCCCAGAAAAAGCCAAACAAATCGCAGAGCCTGCCGAGAAACCTGGCGATACTAATTTGGGTGATTCCGATTCAGATGTTCATACGTTTTACATACCGCTTCAAGGAGCTGCAGTTGGAGGAAGTGGTGAAGGCAAGTCAGATTTGATCCAAGGTGTGGCAGTTAAACTAGGCCGAGAAGGTCCTGAAGGACCCAACCAGAAAGTAGTGATGCATGCGACATTAGTCACGAAATCACAGATGGGGTCCAATTCGAAACCTCTTCCGGATTCAATGAATGTGTCTGAAATAGTGAAAAATCTTCTTAGCTCAACCTCTTTGCAAACAAATAACAAGGATGCCAGTATCGTAGCCCCTATAACGCCGCCTTCTATATTTGTCCCTGCGACAAGTAGTTCCGCATCTGTTGCTGCTGCGCCGCAACAAACCGTGGCAGCAACTACAACAGCTGGAACTTCAGTGGGCAGTTCGAAAAGTGTGCCTGTCGGAACGGTTCAGCCTAGGTTTAAGTCAAACGAATCGGGTGCAGCGCAGCCGAATCATGCATCCGGTTCAGGTGCTTTAACtcgcgtcaattcaaactcatCGCTCTTTTCTGGTTCTAATAAATCTCGTGGACAatcttgcaaaaaaatcaagGACGATACCCCAATAAAAATGTGCAATAATACAGCTTTTCCTCGTCATGATGATCCAACGCAAATGGTTGAAGCACCAATATTCCGGCCAACCGAAAAGGAATTTTTAGATCCCATGGAGTTCATTGATAGGATCACACCGATAGCAGCACGATTTGGCATCTGCAAAATCATACCACCTGCAAGCTTCAAGCCGGAGTGCAGAGTATCGGACGACATGCGGTTCACAGCGTACAATCAGTATGTCCACAAAATGCTTCATAGATGGGGTCCAAGTACAAAGGAACtgagtgcaattaaaaaatatctagCCACACAAAGTGTTGTGATGAATCACCCACCTTGGATTGGAGGAATGGAAGTTGATCTACCAAGACTTTATCATACTGTTCAAGAGTTGGGAGGCCTCAAAGAGGTCATCGAAAAGAAAAAGTGGACTCGAGTGGCTGAAGAAATGTGCATTCCTAAGTTAGCGCAGGATCGCGTAACAAAGCTCGATGATATATATTGTAGGTATCTCCTACCGTACGATACATTGTCGCCGAGTGAACGTCAAAAGCTTTTTGATGAAGTAGAAGCTGATTGGGCGAAGCGCGAGGCAAGGGCAAGGCGAAACGCTGATCGATTTGTTAACACTGAAAGCGTTAGCAACGAAGACGATGAAGTATCGAGCGAAGACGACGAGGAGTCTGAGGAAGAAGTAGACGGTGTATCAATGGAGTGTATAGTGAAGGGTCGAAGTATGCCCCTAAGTCAATTTTTCCGAATAGCTCGCAATACAATGTCTTTGTGGTTTAAGAACTCAGAGCCGTCTGTGACCGAAGTAGAAGCGGAATTCTGGCGCCATGTTGCAGTGCGAGATAGCCATGTGTGTGTGCATTCCGGATCGATTGACTCCAGTGGCTGGGGATACGGTTTTCCTTCTCCTGGACCAAAAGGGAAAGGATCTGTGTGCGCTCGTCATCCATGGAATCTTAAAGTGTTAACGAACAATGCTGGATCAGTGCTCCGCTCATTAGGTCCAGTGATGGGAGTAACTGTTCCAACACTTCACGTTGGGATGCTGTTTAGTGCGTGCTGCTGGTATCGGGACCCACACGGATTATCATGGATTGAGTATTTGCACACTGGTGCGAGTAAATTGTGGTACGGCATTCCTGATGATCAAAGTGCAAATTTCCGATCGGCCCTTACTTCACTCATCCCAACTCacattcaaaacaaaacaatttggcTGCCCTGCGATACGGTAATGGTGCCGCCACATATGTTAACTGACCGCGGGGTGTCTTTGTGCCGTATAGAACAAAAACCAGGAGAGTACGTTGTCATTTTTCCGAGGGCTTACACTTCCAGTGTCTCAACTGGTTATGTTGTGTCGGAAAGTGTCTATTTTGCTACAAGTTCTTGGCTGGAATTAGGAAAAGATGATTTTAGAgataTTCACGATAGCTGTGAACCAGCGATGTTTTCGTTGGAGCAATTATTGTTTGCTCTAGCATCTGACCAACGAGTAACTGCTGATGTACTTTCTCAAATGTTGCCTATGATCAACGAGGTGTTCGAAAAAGAAGTTGCTGCTAGGGAACAGCTTAAGGCTGCTGGTGTTACATCAACAGAAAAAATTCCAGCAGAAAAAACTACTAAATCCAGAAAACAGCCCATAACATCCATTCAAAATGAATGCGACTTATGTCGAGCAAATCTGTATATATCGATGGTGAAAACCGACGAAGGAAATATCTACTGTTTACAACATGCCCTTAAAAATCTTAACAAAGGAAACATCCAAGCCAAACAATGTAAACTCATATTTAGTTACAACATAGAAGATATTGAGAATCTTATCAAAACCTTAAAGGATCGACTTGTACAAAAGCGAACCGCTGCTAATAAGAAATCTAAGTAG
Protein Sequence
MVVSKDSKRKRKESPLIESSPEMPKRTKVQAQRKFAQGQSAPTSSYSAALASSSTAAAAVSTSLGNSATQENREPPTEILPNKRPKTEDFLTFLCFRGTSALPAHLDFLNQNTSQAPKDESQDTNEKSTEDTESSPTTKANVQKSTRSSSTKKKDKCATVDESSTSTLSVKKTETKKSIAKKNEEVKDEKVMAFAVRKRAEQLPEGNRRGRPPKEKLNKSNDGNRRSVRNKDNNKSFAELDDNESETNDVEIGSADYGQDLNKSDKTPQQKGKRGKPANSAKKKLETSVTASTREVQGPPIEKQGPEERVPQAKPTQAKEKPVIKRPRQKEAPIFVPSPEPTGGGRMTRQRAFFEPVKVIRHEEKEEEVVELKKEPEEIKNKEPSPPPKPVFDKPEEDTAPNRDVFDFSSEDEQPLAKAIKLKNSKEVSAKKSSPKKQQKITAQDKDDFQSKDDISPKTKPVEDAKEKVIEKPAKSENIIDITTERQEDKKVLPEKIKKTPGRKPKKKIIEEQSVISEKSSKHSIEQPRQQKQDNENDLKLLQTTTTTTTTTATVAATRHKKKSTAEIPEIIEPEIRSTRPTRKTKEAATIYMGIIGQKLQLDEFDDDEMSLSSFPDLPNVKEMEKMETELKKNVHQNKQLQNQVQAQTNLATDKSEQKPTSPIKKEIEKPPAKRGRPPKSANSKAANKQKLTKPPQIEGMLRKREDPKPQEIKDNEKEDDEDFLLNEEVNETKRKLEKSFSDSDDEPLAIKLTKGSDDYSKKSDNPPIMMPTMTPNEERAKEPRPAPKMLNLLPITAPAPTLQCNVSTSSQVNSAPLKLDDKPKMPTPLSAPVTAFIPRQPTLKTPPAQTTIPPIQPTIKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRNIDRRIVCLDGSSSLSTMQRPSSSFPSPSPVKYDMSTPKTPSTSNAKIPVVPSTTSSNAQPSSDPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDNLRPNIYATTPPPTRDDKESTSFSSSSKTTRDLGKSESAWSGKGPSLKATPVVLPKDDQRPEECSFSSDAGNKELKEGPKDYQTQKNTAMNKKNDTVTKSKEKMKIDKTKQEKEVKKVQDKVSKEGTGPQKGVKQLNSATTTPAATTSSPRQQKKSDESKKATAINSPTTKAGTAATSNAAKTPKRTTVYNSKLKESTTTSHKKKTPFSYTFGAFSADNEKSIYSFDKEEDDDSKLPLSKPFRRQSRRESHTEDSNQLDQTALHKNTTTVEKKHDNKSQVNVPVTMTTEKNKNAKGSPEKAKQIAEPAEKPGDTNLGDSDSDVHTFYIPLQGAAVGGSGEGKSDLIQGVAVKLGREGPEGPNQKVVMHATLVTKSQMGSNSKPLPDSMNVSEIVKNLLSSTSLQTNNKDASIVAPITPPSIFVPATSSSASVAAAPQQTVAATTTAGTSVGSSKSVPVGTVQPRFKSNESGAAQPNHASGSGALTRVNSNSSLFSGSNKSRGQSCKKIKDDTPIKMCNNTAFPRHDDPTQMVEAPIFRPTEKEFLDPMEFIDRITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSTKELSAIKKYLATQSVVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWTRVAEEMCIPKLAQDRVTKLDDIYCRYLLPYDTLSPSERQKLFDEVEADWAKREARARRNADRFVNTESVSNEDDEVSSEDDEESEEEVDGVSMECIVKGRSMPLSQFFRIARNTMSLWFKNSEPSVTEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSVCARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHIQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEYVVIFPRAYTSSVSTGYVVSESVYFATSSWLELGKDDFRDIHDSCEPAMFSLEQLLFALASDQRVTADVLSQMLPMINEVFEKEVAAREQLKAAGVTSTEKIPAEKTTKSRKQPITSIQNECDLCRANLYISMVKTDEGNIYCLQHALKNLNKGNIQAKQCKLIFSYNIEDIENLIKTLKDRLVQKRTAANKKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2