Basic Information

Gene Symbol
JARID2
Assembly
GCA_905146935.1
Location
LR989929.1:52069824-52082017[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.9e-22 3.6e-18 66.5 0.0 6 89 1666 1747 1662 1747 0.92

Sequence Information

Coding Sequence
ATGGTGGTTTCCAAAGACTCCAAAAGAAAGCGCAAGGAGTCCCCGCTCATTGAATCGTCACCAGAAATGCCAAAAAGGACGAAAGTGCAAGCACAAAGAAAATTTGCACAAGGTCAAAGTGCACCAGCATCATCATATAGTGCTGCATTGGCATCGTCTTCTTCTGCTGCAGCTGGTATGAGCACATCAATAGGAAATTCTACGACGCAAGAAAATCGTGAACCACCAACTGAAATTTTGCCCAACAAAAGGCCAAAAACTGAAGACTTTTTAACATTCCTTTGCTTTCGTGGAACATCGGCACTGCCTGCACATTTAGATTTTTTGAATCAAAATACTTCCCAGGCGCCAAAAGATGAATCTCAAGATACAAATGAAAAATCTAACGAAGATACCGAATCATCACCAACGACGAAAACAAACGTGCAAAAATCTACAAGATCATCGTCTACCAAAAAGAAGGACAAGTGTGCAACCGTTGATGAAAGCTCCACATCTACGTTAAGTATAAAGAAAACTGAAACCAAAAAATCATTAGCAAAGAAAAGTGAAGAAGCAAAAGATGAGAAAATTATGACATTCGCAGTGAGAAAGAGGGCGGAACAATTACCTGAAGGTAACCGTCGAGGCAGACCTCCGAAGGAAAAGCTTAACAAATCTAACGACGGAAATCGGCGTTCCGTCAGAAATAAAGATAACATAAAATCTTTTGCAGAGCTAGATGACAATGAATCCGAAATAAATGACATAGAAACAGGCTCTGTGGACTGTGGGCAAGATTTTTCTAAGTCTGACAAAACTGATAAAACTGAAAAAACTGATAAAACCCCACAGCAAAAAGGCAAACGAGGAAAACCCTCAAATTCAGCTAAGAAAAAGCTCGAGACAAGCGGAGCGGTTTCTGCACGAGAAGTTCAAGGCCCACCTATTGAAAAGCAAGGACCTGAAGAACCCGTCCAACAAACAAAACCAACACAGGCCAAAGAAAAACCCGTAATAAAAAGACCCCGCCAAAAAGAAGCTCCCATATTTGTACCGTCGCCAGAGCCAACAGGTGGAGGAAGAATGACACGACAACGGGCATTTTTCGAACCAGTCAAAGTTATACGTCATGAAGAAAAAAAGGAAGACGATGATGTAGAAGAGCTGGAGGAAATGAAAAACAAAGAATCCTCCCCACGGCCAGAGCCGGTAATTGATAAACAAGAAGAAGATATTGCTCCAAACAGAGATGTTTTTGATTTTTCTTCAGAAGACGAACAACCACTGGCAAAAGCTATCAAGTTAAAAAACTCAAAAAAGTCATCCCCAAAAAAGCAGCAAAAACTCGTTGCCCAAAGCAAAGAGGTCGCTCAAAATAAAGATGATAATCTACCAAAAACCAGACCAGCAGAAAATGTAATTGAAAAGCCATACAAAAGCGAAGAGATCAACAATGTAAAGGTTGAAGGGCAAGAAGACGAAAAAGTTTTACCAGAAAAAATTAAAAAAACGCCTGGCCGAAAACCCAAAAAAAAGATTACAGAAGAACAGTGCGTTGTGTCCGATAAATGTTTAAAAAACTTAAATGATCAAAACAACCAACAAAAACAGGACAATGATGATTTAAAGTTGTTACAAACAACTACCGCAACTTCATCTTCTCGGCAAAAGAAAAAGGCAATTGCAGAAATTCCTGAAATCATTGAACCTGAAACTCGAAGTACACGGCCAACGAGGAAGACTAAAGAAGCTGCTACTATTTACATGGGTATAATTGGGCAAAAACTGCAGTTAGATGAATTCGACGACGACGAATTGTCATTAAGCAGTTTTCCTGAACTACCAAACGTAAAAGAAATGGAAAAAATGGAAACAGAATTGAAAAAGAACGTGGAACAGAACAAACAATTAAAAAACCAGACTTCTGAAATAACTACCGACAAATCCGAAACAAAACAGACATCACTCTTAAAAAAAGAAATTGAAAAGCCACCAGCGAAAAGGGGTCGCCCGCCAAAAGGCGGCGCTTCGAAAGTTGCCGCCAAACAAAAACTCACAAAACCCCCTCAAATAGAGGGCATGCTTCGGAAAAGGGAAGAACCAAAACCACAGGAAATTAAAGACAATGAAAAAGAAGATGATGAGGACTTCCTGTTGAATGAGGAAGTCAACGAAACCAAGCGAAAACTCGAAAAAAGCTTCAGCGACTCAGATGACGAACCATTGGCTATTAAATTGACAAAAGGCTCCGATGACTATTCAAAAAAATCTGATAATCCCCCAATAGTTAGGATGCCAACTATGACGTCTATTGAAGACAGAGCCAAAGAACCACGACCAGCTCCAAAAATGTTAAACCTTCTTCCCATAACAACCCCCGCACCCACGTTGCAATGCAATGTCCCAACATCAGCTCATGTGAACTCTACCTCACTAAAGTTGGATGATAAACCAAAAATGTCCAATCCCTTGCCGGCTCCGGTTCCTGCATTTATACCACGACAACCCACACTTAAAACTCCTCCAGCTCAAACTACCATTCCCCCTCTTCAGCCAACTATTAAATACCAAACACCACCAACAACATATCCACCCCCGATTGAAGCATATCCGTCACCAAAAATCAACCCAAACTTTCTCACCCCTAAGTTTGACCGAAATATAGATCGACGCATAGTTTGCCTTGATGGCTCTTCTTCGCTATCAACCATGCAAAGACCGAGTAGCAGTTTTCCATCACCATCTCCAGTAAAATATGATATGTCAACTCCGAAAACGCCTAGTACTTCGAATGCAAAGCTTCCAATGGTGCCATCGACAACATCTTCTAATGCGCAGCCATCATCCGATCCACTAAAAGATGAAATCGGAAGCATTTTAGCAGCCAATTTGATGCCAAGCAAAGAAGAATCAGGTAAAATCTTTGGCATCGCCAGTGTAAGTTTGGCACAAAGTTCCGGACCAGACAACACAAAGTGTACATTAGGAAAATGTGGTTCAATACATAAGCCTGTACTTGGGCCAGTTGTTCCAACTGAATCTTATCTGGGCGAACAACTTTCTAGTAAGGAAAGGCGAAAAGCCAAGGTAAACATGACACATGAACAAATCCAAAAGTGGTTGATAGAATGCTCTTCGAATCCGGATGAGATTCAAGACGATTTGGACGATGATTTTGATGACAATCTTCGTCCAAACATTTATGCAACTACGCCTCCGCCAACAAGAGACGACAAAGAGAGCACTTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTCAGGCAAAGGACCCTCCTTGAAGGCTACGCCTGTGGTCTTACCAAAAGATGATCAAAGACCAGAAGAATGTTCTTTCTCCTCAGATGCAGGAAACAAAGACATCAAAGAAGTTTCCAAGGACTATCAGACTCAAAAAACTACAGCTATGAACAAGAAAAATGACTCAGTCGCGAAATCTAAAGAAAAAGTCAAAATTGATAAAGGCAAACAGGAGAAAGAAACCAAGAAAGTTCAGGATAAAGGGTCGAAAGATGGAACTGGCCCTCAAAAAGGAGCAAAACAGTCAAACTCGGCAACTACACCCACTGCAGCTACACCTTCTTCAAGACAGCAGAAAAAATCAGATGACAGCAAAAAGACTACAACAATTAGTTCGCCCACAACTAAAGCCGGGAATGCAGCCACATCAAATGCAGCTAAGACTCCAAAACGTACAACAGTATACAACTCTAAGCTAAAAGAGACGACAACAACAAGTCATAAGAAGAAAACTCCGTTTTCCTACACTTTTGGTGCATTTTCGGCAGATAACGAAAAAAGTATTTATTCCTTTGATAAAGATGAAGACGACGATACGAAGCTTCCTTTATCGAAACCATTCCGGAGACAAAGTCGTCGGGATTCACATAATGAAGATTCCAATCAGCCTGATCAAGTTGTATTGCACAAAAATTCCACCACCACCGTTGAAAAGAAGCATGAAAATAAATCACAAGTCAATGTTCCTGCAGTCGTGGCTACGGAGAAGAATAAGTCTGCAAAAGGAAGTCCAGAAAAAGGTAAACAAATTGTGGATTCTGCCGAAAAATCTGTCGATGCCAATGTAGGTGATTCCGATTCTGATATTCATACGTTTTACATACCCCTTCAAGGAGCTGCAGTTGGAGGAAATGCTGAAGGCAAGTCAGATTTGATCCAAGGTGTGGCAGTAAAACTAGGACGAGAAGGTCCCGAAGGCCCCAATCAAAAAGTTGTGATGCACGCTACTTTAGTCACGAAATCACAGATGGGTTCGAATTCAAAGCCGCTACCGGATTCAATGAATGTTTCGGAAATAGTGAAGAATCTTCTAAGTTCAACCTCTTTGCAGGCAAATAACAAGGATTCTAGTGTGGTAGCGCCTATAACCCCGCCTTCTGTATTTGTCACAGCGGCAAATAGTTCCGCCTCTGTTGCTGTTGTACCGCAACAAACAGTTACAGCGACAGCGACAGCAACAGCAAACACTACAGCTGGAACTTCAGTGGGTAGCTCGAAAAGTGTGCCTGTGGGAACTGTTCAACCTAGATTTAAATCAAATGAACCGGGAGTAACGCAGCCAAATAATGCATCCGGTTCGGGTGCTTTAACACGCGTCAATTCGAACTCGTCGCTGTTCTCTGGTTCTAATAAATCTCGTGGGCAATCGAGTAAAAAGATCAAAGACGACACTCCAATAAAAATGTGCAATAATACAGCTTTTCCTCGTCATGATGATCCAACGCAAATGGTTGAAGCACCAATATTCCGGCCAACCGAAAAAGAATTCTTAGATCCCATGGAATTCATTGACAGGATCACTCCGATAGCGGCCCGGTTCGGTATCTGCAAAATTATACCACCCGCTAGCTTTAAGCCAGAGTGCAGAGTGTCGGACGACATGCGATTCACAGCTTACAATCAGTATGTCCACAAGATGCTTCACAGATGGGGCCCAAGTACGAAGGAACTGAGTGCAATTAAGAAATATCTAGCCACGCAAAGTGTTGTGATGAATCACCCGCCATGGATTGGAGGAATGGAAGTTGATCTACCAAGACTTTATCATACAGTTCAAGAATTGGGAGGCCTCAAGGAGGTTATCGAAAAGAAAAAGTGGGCTCGAGTGGCCGAAGAAATGTGCATTCCTAAGTTAGCGCAGGATCGCGTAACAAAGCTCGACGATATCTACTGCAGGTATCTTTTACCGTACGATACACTGTCGCCAAGTGAACGTCAAAAACTTTTTGATGAAGTGGAAGCTGACTGGGCGAAGCGTGAAGCAAGAGCAAGGCGAAATGCTGATCGATTTGTTAACACTGAAAGCGTTAGCAATGAAGACGATGAAATATCGAGCGAAGACGATGAGGAGTCTGAGGAAGAAGTTGACGGCGTATCCATGGAGTGTATAGTTAAAGGCAGAAGTATGCCTCTCAGTCAATTCTTCCGAATTGCTCGCAACACAATGTCTTTGTGGTTTAAGAACTCAGAGCCTTCTGTGACGGAAGTGGAAGCGGAATTCTGGCGGCATGTTGCCGTACGAGATAGCCACGTGTGTGTCCATTCCGGATCGATTGACTCGAGTGGCTGGGGATATGGTTTCCCTTCTCCTGGGCCAAAAGGGAAGGGATCCGTGTGTGCTCGCCATCCGTGGAATTTAAAAGTTTTAACAAATAACGCAGGGTCAGTGCTGCGCTCATTGGGTCCAGTGATGGGAGTAACTGTTCCAACACTTCACGTTGGAATGCTCTTTAGCGCTTGCTGTTGGTATCGAGATCCACATGGATTATCATGGATTGAGTATTTGCACACTGGTGCTAGTAAATTGTGGTACGGGATTCCCGATGATCAAAGTGCAAACTTCCGCTCGGCTCTCACGTCACTTATCCCAACTCACATTCAAAATAAAACAATTTGGCTGCCCTGCGACACGGTTATGGTGCCGCCGCATATGTTAACTGACCGCGGGGTGTCTTTGTGCCGTATAGAACAAAAACCCGGAGAGTATGTTGTCATTTTCCCGAGGGCATACACTTCAAGTGTATCAACTGGTTATGTAGTATCAGAAAGTGTTTATTTCGCTACTAGCTCTTGGCTGGAATTAGGAAAAGATGATTTCAGAGATATTCACGATAGCTGTGAGCCAGCAATGTTTTCGTTGGAACAATTATTGTTTGCTCTAGCATCTGATCAGCGAGTAACGGCTGATGTACTTTCTCAAATGTTGCCTATGATCAACGAGGTGTTCGAAAAAGAAGTTGCAGCTAGGGAACAACTTAAGGCTGCTGGTGTAACATCAACAGAAAAAATCCCAGCTGAAAAAACTAATAAATCCAAGAAACAATCTACAGCATCAATTCAAAGCGAATGCGACTTGTGTCGAGCTAATCTGTATATATCAATGGTTAAAACCGACGAAGGAAATATCTACTGTCTACAACATGCCCTTAAAAATCTTAACAAAGGAAACATTCAAGCCAAACAATGCAAACTCATATTTAGTTACAACATTGAAGATATTGAGAATCTTATCAAAACTTTAAAAGATCGACTTGTACAAAAGCGAACCGCTGCTAGTAAGAAATCTAAGTAG
Protein Sequence
MVVSKDSKRKRKESPLIESSPEMPKRTKVQAQRKFAQGQSAPASSYSAALASSSSAAAGMSTSIGNSTTQENREPPTEILPNKRPKTEDFLTFLCFRGTSALPAHLDFLNQNTSQAPKDESQDTNEKSNEDTESSPTTKTNVQKSTRSSSTKKKDKCATVDESSTSTLSIKKTETKKSLAKKSEEAKDEKIMTFAVRKRAEQLPEGNRRGRPPKEKLNKSNDGNRRSVRNKDNIKSFAELDDNESEINDIETGSVDCGQDFSKSDKTDKTEKTDKTPQQKGKRGKPSNSAKKKLETSGAVSAREVQGPPIEKQGPEEPVQQTKPTQAKEKPVIKRPRQKEAPIFVPSPEPTGGGRMTRQRAFFEPVKVIRHEEKKEDDDVEELEEMKNKESSPRPEPVIDKQEEDIAPNRDVFDFSSEDEQPLAKAIKLKNSKKSSPKKQQKLVAQSKEVAQNKDDNLPKTRPAENVIEKPYKSEEINNVKVEGQEDEKVLPEKIKKTPGRKPKKKITEEQCVVSDKCLKNLNDQNNQQKQDNDDLKLLQTTTATSSSRQKKKAIAEIPEIIEPETRSTRPTRKTKEAATIYMGIIGQKLQLDEFDDDELSLSSFPELPNVKEMEKMETELKKNVEQNKQLKNQTSEITTDKSETKQTSLLKKEIEKPPAKRGRPPKGGASKVAAKQKLTKPPQIEGMLRKREEPKPQEIKDNEKEDDEDFLLNEEVNETKRKLEKSFSDSDDEPLAIKLTKGSDDYSKKSDNPPIVRMPTMTSIEDRAKEPRPAPKMLNLLPITTPAPTLQCNVPTSAHVNSTSLKLDDKPKMSNPLPAPVPAFIPRQPTLKTPPAQTTIPPLQPTIKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRNIDRRIVCLDGSSSLSTMQRPSSSFPSPSPVKYDMSTPKTPSTSNAKLPMVPSTTSSNAQPSSDPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDNLRPNIYATTPPPTRDDKESTSFXXXXXXXXXXXXXXXXWSGKGPSLKATPVVLPKDDQRPEECSFSSDAGNKDIKEVSKDYQTQKTTAMNKKNDSVAKSKEKVKIDKGKQEKETKKVQDKGSKDGTGPQKGAKQSNSATTPTAATPSSRQQKKSDDSKKTTTISSPTTKAGNAATSNAAKTPKRTTVYNSKLKETTTTSHKKKTPFSYTFGAFSADNEKSIYSFDKDEDDDTKLPLSKPFRRQSRRDSHNEDSNQPDQVVLHKNSTTTVEKKHENKSQVNVPAVVATEKNKSAKGSPEKGKQIVDSAEKSVDANVGDSDSDIHTFYIPLQGAAVGGNAEGKSDLIQGVAVKLGREGPEGPNQKVVMHATLVTKSQMGSNSKPLPDSMNVSEIVKNLLSSTSLQANNKDSSVVAPITPPSVFVTAANSSASVAVVPQQTVTATATATANTTAGTSVGSSKSVPVGTVQPRFKSNEPGVTQPNNASGSGALTRVNSNSSLFSGSNKSRGQSSKKIKDDTPIKMCNNTAFPRHDDPTQMVEAPIFRPTEKEFLDPMEFIDRITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSTKELSAIKKYLATQSVVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCRYLLPYDTLSPSERQKLFDEVEADWAKREARARRNADRFVNTESVSNEDDEISSEDDEESEEEVDGVSMECIVKGRSMPLSQFFRIARNTMSLWFKNSEPSVTEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSVCARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHIQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEYVVIFPRAYTSSVSTGYVVSESVYFATSSWLELGKDDFRDIHDSCEPAMFSLEQLLFALASDQRVTADVLSQMLPMINEVFEKEVAAREQLKAAGVTSTEKIPAEKTNKSKKQSTASIQSECDLCRANLYISMVKTDEGNIYCLQHALKNLNKGNIQAKQCKLIFSYNIEDIENLIKTLKDRLVQKRTAASKKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00664642;
90% Identity
iTF_00694379; iTF_00693568;
80% Identity
-