Edem025239.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
-
Assembly
GCA_945869435.1
Location
CAMBUM010000457.1:14038-22228[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.3e-05 0.0023 19.8 4.9 1 23 180 202 180 202 0.98
2 17 2.2e-05 0.0021 19.9 5.2 1 23 208 230 208 230 0.97
3 17 0.0016 0.16 14.0 1.0 1 23 236 258 236 258 0.97
4 17 1.5e-05 0.0015 20.3 1.1 1 23 264 286 264 286 0.96
5 17 1.6e-05 0.0015 20.3 3.2 1 23 327 349 327 349 0.97
6 17 1.4e-05 0.0013 20.5 5.0 1 23 353 375 353 375 0.98
7 17 0.015 1.5 10.9 2.0 1 23 381 403 381 403 0.99
8 17 3.9e-05 0.0038 19.1 2.5 1 23 409 431 409 431 0.98
9 17 1.8e-05 0.0017 20.1 2.3 1 23 437 459 437 459 0.99
10 17 0.0005 0.049 15.6 1.2 1 23 465 487 465 487 0.94
11 17 1.4e-05 0.0013 20.5 0.1 1 23 493 515 493 515 0.98
12 17 1.1e-05 0.0011 20.7 4.0 1 23 527 549 527 549 0.97
13 17 0.00012 0.011 17.6 6.5 1 23 555 577 555 577 0.97
14 17 0.00012 0.011 17.6 3.0 1 23 583 605 583 605 0.97
15 17 1.2e-06 0.00012 23.8 1.8 1 23 611 633 611 633 0.98
16 17 0.00028 0.027 16.4 0.7 1 23 639 661 639 661 0.97
17 17 7.3e-06 0.00071 21.3 4.6 1 23 667 690 667 690 0.98

Sequence Information

Coding Sequence
ATGCACTTTGAATTTCCTATGCTGTGTTCTTTAGGGAATGACGAGTGCGGGATCTGCGAGGTGTGCGTGGCCCGGCTGCGGGACGCGAAGGACTTCAAACAGCAAGTGCAGCGCAGCCAGGCGGAGCTGCAGTCGCGGATGCAGGGAACATGGAATGCCAGGGaTGACTTCACTCGCAAGCTCAATATCAAATTGGAGAAAGCTTCTGGAGATGAGGCTGTCATACGCGATATCAAGTTGGAGAAGTCAGACGTGGAGATGGCTGATGGGGCAGTTGTATCATTGGCATTATACGGTGCACCGCCAACGGCCGCGCAGCTCGCTCTAAAAAAAGCCGGCATCAGCACAAAACCGGCGGTAATATTGCTGGCTCCGACTGCAACTAAGCCAGTTGCAACCACAACTAAGCCGCCATCGACGACATTTCCGACAAGGGAGACATCATCGTCGCCGGATACATCGCCGAGACGTGGGACATCGCCGACAGAGGGAATGTCGCCGATTCCGGACGCGACTAAACCTGCGCGCGGCGTGATCCACACCTGCAAATATTGCCAGAAGTCGTTCGACCACCAATCAGCCCTTGTACTTCATCAGCGCCTACACACTGGAGAAAAACCCTATTCGTGCAACGTCTGCCACAAGAGATTCTCGCAGAAGGGCAACTTGAACTCCCATTTCAAATACCACATGGGTGACTATCGATTCTTCTGCGAAATCTGCAACAAAAGGTTCACGGAGAAGTGGATCATGGCTAACCATATGAAGACACACACCGGTGAAAAACCTCACGCTTGCGAAGTATGCAATAAAAAGTTTGCACTGAAAGGTAATTTGACCGTTCATTTGAAAACTCATGTAAAAAAAGCTGAAGATGATAAAGACCAAACAGGTGAAAAGCCGGTGTGCAAAAAGGAGGCACAAGGAAGTAAGCCGAGAAGTAGGTCAACAGGTAAAGaacagacggacggaaaactCTTCGAGTGCGAAGTATGCAATAAGAAATTTGCTCAGAAATGCAACTTAACTGCTCATTTAAAGTTTCATGCGCCCTCGTTCTCTTGCGATCACTGTGAGAAGAAATTCGCTTCTAAATGTAACTTGAATGCTCATATGCTTCGTCACACAGGGTTGGCCATGTACAAGTGTGATATATGCAGTAACCAGTATAAATACAAACGTTCTTTAGACCTTCATTTAACAACTCACACTGGAGACTACAAATACACGTGCAATATCTGCAATAAACAATTCGTACATAGAGAGACCATGAAGCGACATGTGCTTGTACACACTGGAGAAAAACCTTACACCTGTGACATATGCAATAAGCAATATAAATCTAAGCGATCTTTATCCCTCCATATGACAACGCATACAGGAGACTATAAATATACGTGCAATGTGTGCAATAAACAGTTCGTCCATGAAGCGACCATGAAACGGCATGTGGTTGAACACACAGGAGAAAAGCCTTTCATCTGTGATATATGTAATAAGGCGTATCCGCTAAAAGTTGATCTGATCAAACATATGCAAACGCACACTGGTATAAAACCGGCTGGTTCCGGTAATGTTTATTGCTGTGAAATTTGTGGAAAACAATTTAGGCAAAAGAATTACTTTAATAAACACATGGATATCCACAGCGGCAAAAGGCCGCATATGTGTGAAATCTGTAGTAAAACTTTTACTCacaaatatcttttaaaaacccACAAATTAACACACTCTAAAGAAAAACCCTTCTGCTGCAAACTATGTCCAAAGCGATTCCGGATGAGCAAAGGTCTACAAAGTCACATGCTCATTCACGAAGGTCTAAAACCATACATCTGCGATATATGCAGTAAACAATTTAGACATAAATCCGCTCTCATGGTGCACATCCGACGGCACACTGGACATAAACCACACTCGTGCGATATCTGTAAAAGAGAGTTCATAGTTTTGGCTGAATTGAAAGTGCATTACCGTAGTCATACTGGAGAGCAACCATATCAGTGCGAAATATGCCATAGGAAATTTGCGCGGCCTGACCATTTCAGGAAGCACGTTAAGCGTGTTCACAACGAGAAGCCCGCGAAGGCTGCCGCGGCGGCTGCGATGCAGCGACCCTCGCAGATGGCGTCTAATAATGAGTATAGACGGTATAAGTCGCTGGCGCCGGTGGCCTTGGCGTACCAGAGATGGCAGGGGATGGGCAATATGTAA
Protein Sequence
MHFEFPMLCSLGNDECGICEVCVARLRDAKDFKQQVQRSQAELQSRMQGTWNARDDFTRKLNIKLEKASGDEAVIRDIKLEKSDVEMADGAVVSLALYGAPPTAAQLALKKAGISTKPAVILLAPTATKPVATTTKPPSTTFPTRETSSSPDTSPRRGTSPTEGMSPIPDATKPARGVIHTCKYCQKSFDHQSALVLHQRLHTGEKPYSCNVCHKRFSQKGNLNSHFKYHMGDYRFFCEICNKRFTEKWIMANHMKTHTGEKPHACEVCNKKFALKGNLTVHLKTHVKKAEDDKDQTGEKPVCKKEAQGSKPRSRSTGKEQTDGKLFECEVCNKKFAQKCNLTAHLKFHAPSFSCDHCEKKFASKCNLNAHMLRHTGLAMYKCDICSNQYKYKRSLDLHLTTHTGDYKYTCNICNKQFVHRETMKRHVLVHTGEKPYTCDICNKQYKSKRSLSLHMTTHTGDYKYTCNVCNKQFVHEATMKRHVVEHTGEKPFICDICNKAYPLKVDLIKHMQTHTGIKPAGSGNVYCCEICGKQFRQKNYFNKHMDIHSGKRPHMCEICSKTFTHKYLLKTHKLTHSKEKPFCCKLCPKRFRMSKGLQSHMLIHEGLKPYICDICSKQFRHKSALMVHIRRHTGHKPHSCDICKREFIVLAELKVHYRSHTGEQPYQCEICHRKFARPDHFRKHVKRVHNEKPAKAAAAAAMQRPSQMASNNEYRRYKSLAPVALAYQRWQGMGNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00656349; iTF_00289862; iTF_01072772;
90% Identity
iTF_00656349;
80% Identity
-