Nudd048198.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:6897853-6909028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7e-05 0.0019 20.1 3.8 1 23 205 227 205 227 0.98 2 17 3.7e-06 0.00042 22.2 3.3 1 23 233 255 233 255 0.98 3 17 0.0021 0.24 13.5 1.1 1 23 261 283 261 283 0.97 4 17 7.5e-06 0.00086 21.2 1.2 1 23 289 311 289 311 0.98 5 17 1.6e-05 0.0018 20.2 3.5 1 23 351 373 351 373 0.97 6 17 1.1e-06 0.00012 23.9 4.9 1 23 377 399 377 399 0.98 7 17 0.015 1.7 10.8 2.0 1 23 405 427 405 427 0.99 8 17 3.5e-05 0.004 19.1 2.0 1 23 433 455 433 455 0.98 9 17 3.1e-05 0.0035 19.3 2.3 1 23 461 483 461 483 0.99 10 17 0.00049 0.056 15.5 1.2 1 23 489 511 489 511 0.94 11 17 1.5e-05 0.0017 20.3 0.1 1 23 517 539 517 539 0.98 12 17 2.6e-05 0.003 19.5 4.0 1 23 551 573 551 573 0.97 13 17 0.00012 0.013 17.5 6.5 1 23 579 601 579 601 0.97 14 17 8e-05 0.0092 18.0 3.2 1 23 607 629 607 629 0.97 15 17 1.2e-06 0.00014 23.7 1.8 1 23 635 657 635 657 0.98 16 17 0.00028 0.032 16.3 0.7 1 23 663 685 663 685 0.97 17 17 7.2e-06 0.00082 21.3 4.6 1 23 691 714 691 714 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTTCTGCTTTCGTGTCGCTGCTGCCTGCTGCGCCCTCCCGACAAGGGAATCCATACGCTGTACCATCATCTTGGCAAAACTGAGATTTACTCAGACATGATGCGAGAATGCTTCGATATAtctctAACTTTAGGGAATGACGAGTGTGGAATCTGTGAGGTGTGCGTGGGCCGGCTGCGAGATGCGAAAGACTTCAAATTGCAAGTGCAGCGCAGTCAGGCCGAACTTCAGGCAAGGATGCAGGGAACATGGACTGCCAAGGATGACTTCACTCGCAAGCTCAATATTAAGTTGGAGAAAGCTTCTGGAGATGAGGCTGTCATACGTGAAATCAAGTTGGAGAAGTCGGATGTTGAGATGGCTGATGGAGCGGTTGTGTCACTGGCATTATACGGCACACCGCCAGGGGCCGCTCAGAGCGGTTCAAAGTCGACCCCCGTCTCGACTAAGCCGACCCCTGTCTTAACAAAGCCGACCACATCATCGACAAAGCCGACCCCGTCATCGACAAAGCCGGCTTCAACCAAAACAAAGCTAATACCAGCTGTCACAATACCCACACCTGACACGACGAAGACGACGACCCCAGCCGTCCGCGGCGTGATCCACACCTGCGAGTATTGCCAGAAATCATTCGACCATCAATCAGCCCTCGTACTTCACCAGCGTCTTCACACAGGAGAAAAGCCTTACACGTGCAATGTCTGCAACAAAAGATTCTCGCAAAAAGGCAACTTGAACTCACATTTCAAATATCACATGGGTGATTATCGATTCTTCTGCGAAATATGCAATAAGAGATTCACGGAAAAGTGGATCATGGTCAACCATATGAAGacacacacaggagaaaaaccacACGTATGTGAAGTGTGCAATAAGAAATTTGCGCTTAAAGGTAATTTAACTGTTCATTTGAAAACTCATTTGAAGAAAACTGAAAATAAGAGTGAAGAAGGCGAAAAATCGGATTGCAAAAAGGAGTTTGCACAACAAAGTAAGAGTACTAGATCAAAAAGTAAGGAACAAACGGAAGGCAAGCTTTTCGAGTGTGAAGTTTGCAACAAAAAATTTGCTCAGAAATGCAACTTGAAAGCTCATTTGAAATTCCATGCGCCCTCGTTCACTTGCGATCATTGTGGGAAGAAATTCGCTTCAAAGTGTAACTTGAATGCACATATGCTACGTCACACGGGTTTGGCGCCTTACAAGTGTGACATATGCAGTAACCAGTATAAATACAAACGCTCTTTAGACCTTCACTTAACAACTCACACTGGAGATTATAAATATACGTGCAACGTGTGCGACAAACAATTCGTACATAGAGAGACCATGAAACGACATGTTCTtgtacacacaggagaaaaaccttacACCTGTGACGTATGCAATAAGCAGTATAAATCAAAACGTTCTTTATCCCTTCACATGACAACCCATACAGGAGATTATAAATatacttgcaatgtatgtaataAACAATTTGTACATGAAGCGACCATGAAACGGCACGTGGTTgaacacacaggagaaaaaccctTCGTCTGTGATATATGCAATAAAGGGTACCCATTAAAGGTCGACTTAATTAAACACATGCAAACACACACGGGAATAAAACCGCCAAGTTCCGGAACTATTTATTGCTGCGAAATTTGTGGGAAGCAATTTAGGCAAAAGAATTACTTTTCGAAACATATGGATGTGCACAGTGGAAAAAGGCCGCATATGTGCGAAATTTGTAGCAAAACGTTTACACATAAATACCTGTTGAAAACTCACAAATTAACACACTCTAAAGAAAAACCGTTCTGCTGCAAATTATGTCCTAAGCGTTTCCGCATGAGCAAAGGTCTTCAAAGCCACATGATGATTCACGAAGGTCTCAAGCCATACATCTGCGATATATGCAGTAAGCAATTTAGACATAAATCCGCTTTAATGGTCCACATCCGACGGCACACAGGACATAAACCACATTCCTGCGATATCTGCAAAAGGGAGTTTATAGTTTTAGCTGAATTAAAAGTGCATTATCGTAGTCATACCGGAGAACAACCGTACCAGTGTGAAATATGCCATAGGAAATTCGCACGTCCTGATCATTTTAGAAAACACGTGAAACGCGTTCATAACGAGAAGCCTACCAAACCTTCAGTGAATGCTGCAATGCACAGGCCACCGCAGATGGTGGCTGATGCTGAGTATAGACGGTACAAGTCGCTGACGCCAATGGCGTTGGCTTACCAGCGCTGGCAGGGTATGGGCAATATGTCGAATATGTAA
- Protein Sequence
- MEFLLSCRCCLLRPPDKGIHTLYHHLGKTEIYSDMMRECFDISLTLGNDECGICEVCVGRLRDAKDFKLQVQRSQAELQARMQGTWTAKDDFTRKLNIKLEKASGDEAVIREIKLEKSDVEMADGAVVSLALYGTPPGAAQSGSKSTPVSTKPTPVLTKPTTSSTKPTPSSTKPASTKTKLIPAVTIPTPDTTKTTTPAVRGVIHTCEYCQKSFDHQSALVLHQRLHTGEKPYTCNVCNKRFSQKGNLNSHFKYHMGDYRFFCEICNKRFTEKWIMVNHMKTHTGEKPHVCEVCNKKFALKGNLTVHLKTHLKKTENKSEEGEKSDCKKEFAQQSKSTRSKSKEQTEGKLFECEVCNKKFAQKCNLKAHLKFHAPSFTCDHCGKKFASKCNLNAHMLRHTGLAPYKCDICSNQYKYKRSLDLHLTTHTGDYKYTCNVCDKQFVHRETMKRHVLVHTGEKPYTCDVCNKQYKSKRSLSLHMTTHTGDYKYTCNVCNKQFVHEATMKRHVVEHTGEKPFVCDICNKGYPLKVDLIKHMQTHTGIKPPSSGTIYCCEICGKQFRQKNYFSKHMDVHSGKRPHMCEICSKTFTHKYLLKTHKLTHSKEKPFCCKLCPKRFRMSKGLQSHMMIHEGLKPYICDICSKQFRHKSALMVHIRRHTGHKPHSCDICKREFIVLAELKVHYRSHTGEQPYQCEICHRKFARPDHFRKHVKRVHNEKPTKPSVNAAMHRPPQMVADAEYRRYKSLTPMALAYQRWQGMGNMSNM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658648;
- 90% Identity
- iTF_00289862;
- 80% Identity
- -