Ccan034389.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:5785285-5796424[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.4e-05 0.0018 19.7 4.9 1 23 198 220 198 220 0.98 2 17 5.4e-06 0.00042 21.7 3.1 1 23 226 248 226 248 0.97 3 17 0.0022 0.17 13.5 1.1 1 23 254 276 254 276 0.97 4 17 7.7e-06 0.0006 21.2 1.2 1 23 282 304 282 304 0.98 5 17 1.6e-05 0.0013 20.2 3.5 1 23 343 365 343 365 0.97 6 17 1.1e-06 8.4e-05 23.9 4.9 1 23 369 391 369 391 0.98 7 17 0.0013 0.1 14.3 1.4 1 23 397 419 397 419 0.99 8 17 3.6e-05 0.0028 19.1 2.0 1 23 425 447 425 447 0.98 9 17 2.7e-05 0.0021 19.5 1.6 1 23 453 475 453 475 0.98 10 17 0.0012 0.09 14.4 0.7 1 23 481 503 481 503 0.93 11 17 1.5e-05 0.0012 20.3 0.1 1 23 509 531 509 531 0.98 12 17 2.9e-05 0.0022 19.5 4.0 1 23 543 565 543 565 0.97 13 17 0.00012 0.0092 17.5 6.5 1 23 571 593 571 593 0.97 14 17 8.3e-05 0.0064 18.0 3.2 1 23 599 621 599 621 0.97 15 17 6.8e-07 5.2e-05 24.6 1.8 1 23 627 649 627 649 0.99 16 17 0.00029 0.022 16.3 0.7 1 23 655 677 655 677 0.97 17 17 7.4e-06 0.00057 21.3 4.6 1 23 683 706 683 706 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTTTTGCTTTCGTGTCGCTGCTGCCTGCTGCGCCCTCCCGACAAGGGAATCCACACACTGTATCACCATCTCGGGAAAACTGAGATTTACTCAGACATGCTTCGAGAGTGCTTCGATATAtcaCTTACCTTAGGAAATGATGAGTGCGGTATCTGCGAAGTATGCGTGGGCCGGCTGCGAGATGCAAAAGACTTCAAACTGCAAGTGCAGAGAAGCCAAGCAGAGCTGCAAGCAAAGATGCAGGGAACATGGACTGCCAAGGATGACTTCACTCGCAAGCTGAATATCAAGTTGGAGAAAGCATCTGGGGACGAGGCTGTCATGCGTGAAATCAAGTTGGAGAAATCAGATGTCGAAATGGCTGATGGAGCAGTTGTGTCACTGGCATTGTACGGCTCACCGCCAACGCCCGCGCAGGCCGCTACAAAGCCGACCCCTACCTCGACAAAGCCAACTTCAACCGCGACAAAGCCAACTTCAACCGCGACAAAACTTACTTCAACCACGACAAAGCTGATTCCAGCCGTGACTATACCGGACCCTGACACGACCAAGACTGCGACCCCGGCCGTCCGCGGCGTGATCCACACCTGCAAGTATTGCCAGAAATCATTCGACCACCAATCAGCGCTAGTACTCCACCAGCGCCTTCACACCGGCGAGAAACCCTATTCGTGCAATGTCTGCAACAAAAGATTCTCGCAAAAAGGCAACTTGAACTCCCATTTCAAATATCACATGGGTGACTATCGATTTTTCTGCGAGATATGTAACAAGAGATTCACGGAAAAGTGGATCATGGTTAACCATATGAAGACACACACTGGCGAGAAGCCTCACGTATGTGAAGTATGCAATAAGAAATTTGCGCTTAAAGGTAATTTAACTGTACATTTAAAAACTCATGTGAAGAAATCCGAAAATAGTCGCGAGGACGGTGAAAAGCCTGATAGTAAAAAGGATTTACAAGAAAGTAAGGTGACTACTAGATCAAAACGTAACGAAACAGGAGGACAGCTTTTCGAATGTGAGGTTTGTAACAAAAAATTTGCTCAGAAATGCAACTTGAAAGCTCATTTGAAGTTCCATGCGCCCGAGTTCACTTGCGATCATTGCGGGAAGAAATTCGCTTCTAAGTGTAATTTGAACGCTCATATGCTTCGTCACACGGGCTTGGCGCCTTACAAATGTGATATATGCGGTAACCAGTATAAATACAAACGTTCTTTGGACCTTCACTTAACGACGCACACGGGAGATTATAAATATACGTGTAACGTGTGCGACAAACAATTCGTGCATAGAGAAACTATGAAGCGACATGTTCTTGTGCACACAGGAGAGAAACCTTACATCTGTGACATTTGTAATAAGCAGTATAAATCAAAACGTTCATTATCACTTCACATGACAACTCATACAGGAGATTATAAATATGCGTGCAATGTGTGTAATAAACAATTCGTACATGAAGCGACCATGAAACGACATGTTGTTGAACACACGGGAGAGAAACCCTTTGTATGTGATATATGCAATAAAGGGTACCCACTAAAGGTAGATTTAATTAAACACATGCAAACACACACTGGAATAAAACCGCCAAGTTCCGGAACTATTTATTGCTGCGAAATCTGTGGGAAACAATTTAGACAAAAGAATTACTTTTCGAAGCATATGGATATACATAGTGGTAAACGGCCGCATATGTGTGAAATTTGTAGTAAAACATTTACACACAAGTACTTGTTGAAAACTCACAAATTGACACACTCTAAAGAAAAGCCTTTCTGCTGCAAGTTATGTCCTAAGCGATTCCGAATGAGTAAAGGTCTACAAAGCCACATGATGATTCACGAAGGCCTCAAACCATACGTCTGCGATATATGCAGTAAGCAATTTAGGCATAAATCCGCTTTAATGGTCCACATCCGGCGGCACACAGGACATAAACCACATTCTTGCGATATTTGCAAAAGGGAGTTTATAGTTTTAGCTGAATTGAAAGTGCATTATCGCAGTCACACCGGAGAGCAGCCCTACCAGTGCGAAATATGTCATAGGAAATTTGCTCGTCCTGACCATTTTAGAAAACATGTTAAACGTGTTCATAACGAGAAGCCTACTAAACCTTCAGTGAATGCTGCAATGCACAGGCAACCGCAGGAGATGGTAGCTAATTCTGAGTTTAGACGGTACAAGTCACTGGCGCCAGTCGCGTTGGCGTACCAGCGCTGGCAAGGTATGGGCAATATGTcaaatatgtaa
- Protein Sequence
- MEFLLSCRCCLLRPPDKGIHTLYHHLGKTEIYSDMLRECFDISLTLGNDECGICEVCVGRLRDAKDFKLQVQRSQAELQAKMQGTWTAKDDFTRKLNIKLEKASGDEAVMREIKLEKSDVEMADGAVVSLALYGSPPTPAQAATKPTPTSTKPTSTATKPTSTATKLTSTTTKLIPAVTIPDPDTTKTATPAVRGVIHTCKYCQKSFDHQSALVLHQRLHTGEKPYSCNVCNKRFSQKGNLNSHFKYHMGDYRFFCEICNKRFTEKWIMVNHMKTHTGEKPHVCEVCNKKFALKGNLTVHLKTHVKKSENSREDGEKPDSKKDLQESKVTTRSKRNETGGQLFECEVCNKKFAQKCNLKAHLKFHAPEFTCDHCGKKFASKCNLNAHMLRHTGLAPYKCDICGNQYKYKRSLDLHLTTHTGDYKYTCNVCDKQFVHRETMKRHVLVHTGEKPYICDICNKQYKSKRSLSLHMTTHTGDYKYACNVCNKQFVHEATMKRHVVEHTGEKPFVCDICNKGYPLKVDLIKHMQTHTGIKPPSSGTIYCCEICGKQFRQKNYFSKHMDIHSGKRPHMCEICSKTFTHKYLLKTHKLTHSKEKPFCCKLCPKRFRMSKGLQSHMMIHEGLKPYVCDICSKQFRHKSALMVHIRRHTGHKPHSCDICKREFIVLAELKVHYRSHTGEQPYQCEICHRKFARPDHFRKHVKRVHNEKPTKPSVNAAMHRQPQEMVANSEFRRYKSLAPVALAYQRWQGMGNMSNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658648;
- 90% Identity
- iTF_01072772;
- 80% Identity
- -