Efoe035992.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epiblema foenella
Gene Symbol
-
Assembly
GCA_963556455.1
Location
OY747119.1:3497452-3504602[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.7e-05 0.0022 19.5 8.7 1 23 163 185 163 185 0.98
2 16 7.3e-06 0.00058 21.3 2.4 1 23 191 213 191 213 0.96
3 16 0.002 0.16 13.7 4.1 1 23 219 241 219 241 0.97
4 16 3.7e-06 0.00029 22.3 0.5 1 23 247 269 247 269 0.98
5 16 2.7e-05 0.0022 19.6 4.0 1 23 306 328 306 328 0.98
6 16 1.4e-06 0.00011 23.7 1.3 1 23 332 354 332 354 0.98
7 16 0.0019 0.15 13.8 3.4 1 23 360 382 360 382 0.98
8 16 1.1e-06 8.5e-05 24.0 5.2 1 23 388 410 388 410 0.99
9 16 9.6e-05 0.0076 17.8 0.5 1 23 416 439 416 439 0.96
10 16 1.5e-07 1.2e-05 26.7 1.5 1 23 450 472 450 472 0.99
11 16 2.7e-05 0.0021 19.6 4.4 1 23 480 502 480 502 0.96
12 16 3.1e-06 0.00025 22.5 3.9 1 23 508 530 508 530 0.98
13 16 0.00012 0.0093 17.6 0.4 1 23 536 558 536 558 0.97
14 16 1.6e-06 0.00013 23.5 5.3 1 23 564 586 564 586 0.98
15 16 0.00043 0.034 15.8 0.7 1 23 592 614 592 614 0.97
16 16 2.5e-06 0.0002 22.8 3.8 1 23 620 643 620 643 0.97

Sequence Information

Coding Sequence
ATGGAGTTTCTTCTTTCGTGTCGCTGCTGCCTACTGCGCCCTCCCGAAAAGGGTATTCATACGCAGTACCATCATCTTGGCAAAACGGAGATATACTCAGATATGCTGCGAGAATGCTTCGATATACATctAACTCTAATGAATGACGAGTGTGGGATTTGCGAGGTGTGCGTGGGTCGGCTGCGTGATGCGAAAGACTTCAAACAACAAGTGCAGCGCAGCCAGGTGGAGCTGCAGGCACGGCTACAGGGAGCAACGGATACTAGGGAGGCTGAGGTGACTCGCAAACTCAACATCAAGTTGGAGAAAGCTTCTGGAGATGAGGCTGTCATACGTGAAATCAAGCTGGAGAAGTCAGAAATTGAAATGGCTGACGGGGCGGTTGTGTCAGtggCATTATACGGCGCGCCGCCAACGCCGAAGCATCCGAGTCCGGCCCCGGAACAGCCATCCCCGGCCCCGGCGCCTGCCGTCCGCGGCACCGTCCACACCTGCAAGATATGCCACAAGTCATTCGACCACCAATCAGCGTTCAGGAACCACCAACGCATGCATACAGGGGAAAAACCGTTTGCCTGCAATGTCTGTAACAAGAGATTCTCACAAAAAGGTAACCTAACCTCCCATTTCAAATATCACTTAGGCGATTATCGATTCTTCTGCGATATATGCAATAAAAGATTCACGCAAAAGTGCATCATGGCTAAACATATGATGACACATACTGGAGTAAAACCTTACGCCtgtgaagtgtgcaataaacagtttaCACTTAAAGGCAATTTGACTGTTCATTTAAAAACACACCTTAAATATGAACCTAACAAGGAAACAGGAGAAAAGCCATTAAAAAAGGAGGTACCGCAGGAAAgtaaaaaaatgaatataaaagcGCAGGCGCAGACAGGGAAACTTTTCGAATGTGAAGTATGCAAAAAAAAGTTTGCACAGAAATGCAATTTGAAGGTCCACTTAAAATATCATTCTGAGAGGTTTTCTTGCAATCAGTGCGAAAAGAAATTCACTCTTAAATCTGAATTAAATGCTCATATGCTTACTCACACGGGCGGACCGATACACAAATGCGATGTATGCAATAAATACTATAAATCGAAAATACTTTTAAACCTTCACAAGAAAATACACACCGGAGATTATAAATACACATGCGATGTGTGCAATAAACATTTTGTGCATAAAGATAACATGAGACGGCATATGCGAGTACATACGGGAGAGAGACCATTCGCCTGCGATATATGTAAAAAGGCCTTCGCACTGAAAGCTACTTTAAATTCTCATTTGAAACGCAGGCACGGCCAACGAGATCCCGAGGAAGACGCAACCTACACCTGTGAAAcgtgcaataaagaatttaaCAAAAAGTCTGCTTTAGAGAGACACATTCGAAcgcacactggagaaaaacaaCATAACTTCTGCTGCGAAATTTGCGGGAAACAATTTACACAAAAGAACTACTTTACGAAACATATGGACTTGCACATTGGGAAAAGACCATTCATGTGCGAAATATGTAGCAAAACTTTTACACACAAAAGCACATTAAAAGCTCATAAATTAACACATTCTGAAGAAAAGCCTTTCGCCTGCAAATTATGTCCTAAACGATTCCGACTGAACAAAGGTTTACAAGGCCACATGATGATTCACGAGGGAATCAAACCACACACTTGCGACGTATGCAACAAGAAATTTAGACATAAATCCGCTTTGATGGTCCATATGCGACGACACACAGGACAAAAACCACATTCGTGCGATATCTGTAAAAGGGATTTTATAGTGTTAGCTGAATTAAAAGTGCATTATCGCAGTCACACCGGGGAGCAGCCGTACGTTTGTGAGATATGTCATAAAAAGTTTGCCCGACCTGATCATTTCAGGAGACATGTTAAACGCGTTCACAACGAGAAACCTTCTAAAATTAACGTGGCGGCGACAATGCAACGACCTCCGCAAGCGGTATCTGATACTGAATTAAGACGGTACCAGTCGCTGGCACCAGTCGCCCTGGCGTACCAGCGCTGGCAGGGTATGGGCAATATTTAA
Protein Sequence
MEFLLSCRCCLLRPPEKGIHTQYHHLGKTEIYSDMLRECFDIHLTLMNDECGICEVCVGRLRDAKDFKQQVQRSQVELQARLQGATDTREAEVTRKLNIKLEKASGDEAVIREIKLEKSEIEMADGAVVSVALYGAPPTPKHPSPAPEQPSPAPAPAVRGTVHTCKICHKSFDHQSAFRNHQRMHTGEKPFACNVCNKRFSQKGNLTSHFKYHLGDYRFFCDICNKRFTQKCIMAKHMMTHTGVKPYACEVCNKQFTLKGNLTVHLKTHLKYEPNKETGEKPLKKEVPQESKKMNIKAQAQTGKLFECEVCKKKFAQKCNLKVHLKYHSERFSCNQCEKKFTLKSELNAHMLTHTGGPIHKCDVCNKYYKSKILLNLHKKIHTGDYKYTCDVCNKHFVHKDNMRRHMRVHTGERPFACDICKKAFALKATLNSHLKRRHGQRDPEEDATYTCETCNKEFNKKSALERHIRTHTGEKQHNFCCEICGKQFTQKNYFTKHMDLHIGKRPFMCEICSKTFTHKSTLKAHKLTHSEEKPFACKLCPKRFRLNKGLQGHMMIHEGIKPHTCDVCNKKFRHKSALMVHMRRHTGQKPHSCDICKRDFIVLAELKVHYRSHTGEQPYVCEICHKKFARPDHFRRHVKRVHNEKPSKINVAATMQRPPQAVSDTELRRYQSLAPVALAYQRWQGMGNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01072774; iTF_00658642; iTF_00657468; iTF_00660522;
90% Identity
-
80% Identity
-