Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991076.1:6916871-6930143[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.3e-05 0.0027 19.7 8.7 1 23 163 185 163 185 0.98

2 14 1.7e-06 0.0002 23.2 0.5 1 23 191 213 191 213 0.98

3 14 2.3e-05 0.0026 19.7 4.0 1 23 253 275 253 275 0.98

4 14 2.5e-06 0.00029 22.7 1.2 1 23 279 301 279 301 0.98

5 14 0.0016 0.18 13.9 3.4 1 23 307 329 307 329 0.98

6 14 4.3e-07 4.9e-05 25.2 4.7 1 23 335 357 335 357 0.99

7 14 6.5e-05 0.0074 18.3 0.5 1 23 363 386 363 386 0.96

8 14 2e-07 2.3e-05 26.2 2.0 1 23 397 419 397 419 0.99

9 14 5.7e-05 0.0065 18.5 4.3 1 23 427 449 427 449 0.96

10 14 2.6e-06 0.0003 22.7 3.9 1 23 455 477 455 477 0.98

11 14 9.9e-05 0.011 17.7 0.4 1 23 483 505 483 505 0.97

12 14 1.6e-06 0.00019 23.3 3.7 1 23 511 533 511 533 0.98

13 14 0.00037 0.042 15.9 0.7 1 23 539 561 539 561 0.97

14 14 2e-06 0.00023 23.0 2.5 1 23 567 590 567 590 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.3e-05	0.0027	19.7	8.7	1	23	163	185	163	185	0.98
2	14	1.7e-06	0.0002	23.2	0.5	1	23	191	213	191	213	0.98
3	14	2.3e-05	0.0026	19.7	4.0	1	23	253	275	253	275	0.98
4	14	2.5e-06	0.00029	22.7	1.2	1	23	279	301	279	301	0.98
5	14	0.0016	0.18	13.9	3.4	1	23	307	329	307	329	0.98
6	14	4.3e-07	4.9e-05	25.2	4.7	1	23	335	357	335	357	0.99
7	14	6.5e-05	0.0074	18.3	0.5	1	23	363	386	363	386	0.96
8	14	2e-07	2.3e-05	26.2	2.0	1	23	397	419	397	419	0.99
9	14	5.7e-05	0.0065	18.5	4.3	1	23	427	449	427	449	0.96
10	14	2.6e-06	0.0003	22.7	3.9	1	23	455	477	455	477	0.98
11	14	9.9e-05	0.011	17.7	0.4	1	23	483	505	483	505	0.97
12	14	1.6e-06	0.00019	23.3	3.7	1	23	511	533	511	533	0.98
13	14	0.00037	0.042	15.9	0.7	1	23	539	561	539	561	0.97
14	14	2e-06	0.00023	23.0	2.5	1	23	567	590	567	590	0.97

Sequence Information

Coding Sequence: ATGGAGTTTCTTCTTTCGTGTCGCTGCTGCCTGCTGCGTCCTCCCGAGAAAGGGATTCATACGTTGTATCATCATCTCGGTAAAACGGAGATATATTCCGACATGCTGCGAGAATGCTTCGATATACACCTTACTCTTGGTAACGACGAGTGTGGGATCTGCGAGGTGTGTGTGGCGCGACTGCGAGACGCGAAAGACTTCAAACTGCAAGTGCAGCGCAGCCAAGTGGAGCTGCAGTCGCGGTTAGAGGGAGTGATGAATACCAAAGATGCTGAGGTCACTCGAAAGCTCAATATCAAGTTGGAGAAAGCTTCTGGAGAGGAAGCTGTCATACGTGAAATCAAGTTGGAGAAGTCAGAAATCGAAATGGCTGACGGGGCGGTTGTATCAGtggcATTATACGGCACACCGAAAACACCAAAGCAGCCAAGTCCGACGCCGGAACAGCCGGCCCCCGACCCAGCGCCTGCCGTCCGCGGCACCGTCCATACCTGCAAGATATGCCATAAATCATTCGACCACCAATCAGCGTTCAGAAACCACCAGCGTATGCACACAGgagaaaaaccttacGCATGTGAAAtatgcaataaacaatttaCGCTTAAAGGCAATTTAACTGTTCATTTAAAAACACATCTAAAATATGAACCTAACAAAAAAGAAACAGGAGAAAAGCCTGTATTAAAAAAGGAGGTAGCGCGAGAAACTAAAAATACTAAAGTAAAAGAGCAAGCGGAGCCAAGGGGAAAGCTTTTTGAATGTGAAGTAtgcaaaaaaaagtttgcacAGAAATGCAATTTAAAAGTTCATTTAAAATACCATACTGAGAGGTTCTCCTGCAATCAATGCGAAAAGAAATTCACTCTTAAATCTGAGTTAAATGCTCATATGCTTAGTCACACAGGCGGCCCGATACACAAATGCGATGTATGCAATAAGTACTATAAATCTAAAATTCTTTTAAACCTTCATAAGAAAATTCATACTGGGGATTATAAATATACATGCGATGTATGCGATAAACATTTCGTGCATAAAGATAACATGAGACGGCATATGCGAGTACACACAGGAGAAAGACCATTCGCTTGTGAGATATGTAAAAAGGCTTTCGCGCTGAAAGCTACTTTACAGTCCCATTTGAAACGCAGACACGGCCAAGGCGATCCAGATGAAGACTCGACCTACACCTGCGAAACATGCAATAAACAATTTAACAAAAAGTCCGCATTAGAAAGACATATTCGAACGCATACGGGAGAAAAAGAACATAACTTCTGCTGTGAAATTTGCGGTAAACAATTTACGCAAAAGAACTACTTTTCTAAACATATGGACTTGCATATTGGAAAAAGGCCGTTCATGTGCGAAATATGTAGCAAAACGTTTACACACAAAAGCACATTGAAAGCTCACAAATTAACGCATTCTGAAGAAAAACCTTTCGCTTGCAAATTATGTCCTAAACGATTCCGGCTTAACAAAGGCTTACAAGGCCATATGATGATTCACGAAGGGATTAAACCGCACACCTGCGATGTATGCAGTAAACCATTTAGACATAAGTCAGCTTTAATGGTCCATATGCGACGGCACACAGGACAAAAGCCACATTCCTGCGATATTTGTAAAAGGGATTTCATAGTTTTAGCTGAATTAAAAGTGCATTATCGTAGTCATACCGGCGAGCAGCCGTACGTTTGTCAGATTTGCCAAAAGAAGTTTGCTCGACCTGATCATTTCAGGAGACATGTTAAACGAGTTCACAATGAGAAACCTTCTAAAACTGTAGCGGCCACGTTACAACGACCACCGCAGGCGGTATCTGATGCTGAATTGAGACGGTACCAGTCGCTAGCGCCAGTTGCGCTGGCATACCAGCGCTGGCACAATATTTAA
Protein Sequence: MEFLLSCRCCLLRPPEKGIHTLYHHLGKTEIYSDMLRECFDIHLTLGNDECGICEVCVARLRDAKDFKLQVQRSQVELQSRLEGVMNTKDAEVTRKLNIKLEKASGEEAVIREIKLEKSEIEMADGAVVSVALYGTPKTPKQPSPTPEQPAPDPAPAVRGTVHTCKICHKSFDHQSAFRNHQRMHTGEKPYACEICNKQFTLKGNLTVHLKTHLKYEPNKKETGEKPVLKKEVARETKNTKVKEQAEPRGKLFECEVCKKKFAQKCNLKVHLKYHTERFSCNQCEKKFTLKSELNAHMLSHTGGPIHKCDVCNKYYKSKILLNLHKKIHTGDYKYTCDVCDKHFVHKDNMRRHMRVHTGERPFACEICKKAFALKATLQSHLKRRHGQGDPDEDSTYTCETCNKQFNKKSALERHIRTHTGEKEHNFCCEICGKQFTQKNYFSKHMDLHIGKRPFMCEICSKTFTHKSTLKAHKLTHSEEKPFACKLCPKRFRLNKGLQGHMMIHEGIKPHTCDVCSKPFRHKSALMVHMRRHTGQKPHSCDICKRDFIVLAELKVHYRSHTGEQPYVCQICQKKFARPDHFRRHVKRVHNEKPSKTVAATLQRPPQAVSDAELRRYQSLAPVALAYQRWHNI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654502;
90% Identity: -
80% Identity: -