Eram017494.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia ramella
Gene Symbol
-
Assembly
GCA_947578815.1
Location
OX388222.1:6471401-6487240[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9e-06 0.00073 20.8 6.5 1 23 169 191 169 191 0.98
2 16 2.4e-05 0.0019 19.5 5.5 1 23 197 219 197 219 0.97
3 16 0.0022 0.18 13.3 4.3 1 23 225 247 225 247 0.97
4 16 7.9e-06 0.00064 21.0 0.5 1 23 253 275 253 275 0.98
5 16 5.7e-06 0.00046 21.4 3.3 1 23 312 334 312 334 0.98
6 16 2.7e-06 0.00022 22.4 0.9 1 23 338 360 338 360 0.98
7 16 0.0015 0.12 13.8 3.4 1 23 366 388 366 388 0.98
8 16 8.6e-07 7e-05 24.0 5.2 1 23 394 416 394 416 0.99
9 16 3.9e-05 0.0032 18.8 0.6 1 23 422 445 422 445 0.97
10 16 4.5e-07 3.7e-05 24.9 1.3 1 23 456 478 456 478 0.99
11 16 5.4e-05 0.0044 18.3 4.3 1 23 486 508 486 508 0.96
12 16 2.5e-06 0.0002 22.5 3.9 1 23 514 536 514 536 0.98
13 16 9.4e-05 0.0076 17.6 0.4 1 23 542 564 542 564 0.97
14 16 8.5e-06 0.00069 20.9 4.3 1 23 570 592 570 592 0.98
15 16 0.00021 0.017 16.5 0.7 1 23 598 620 598 620 0.97
16 16 1.7e-06 0.00014 23.0 4.6 1 23 626 649 626 649 0.98

Sequence Information

Coding Sequence
ATGGAGTTTTTACTTTCGTGTCGCTGCTGCCTGCTGCGCCCGCCCGAGAAAGGAATCCATACGCTGTACCATCATCTCGGCAAAACAGAGATATACTCCGATATGCTGCGAGAATGCTTTGATATTCATCTGACTCTAGGCAACGATGAGTGCGGGATCTGCGAGGTGTGCGTGGCCCGGCTGCGGGACGCGAAGGACTTCAAGCAGCAGGTGCAGCGGAGCCAGGTGGAGCTGCAGTCGCGGCTGCAGGGAGCGGCTGATGCTAGGGAGGAGGTCACTGTCAAACAAAACAAACTCAACATCAAGCTGGAGAAAGCGTCTGGGGATGAGGCCGTCATTCGTGAAATCAAGCTGGAGAAGTCAGAAATTGAGATGGCTGATGGGGCAGTCGTATCAGTTGCATTATACGGCTCACCGCCGACATCAACGCCAGCAAAGTCGACTCCAGCCGCAGAAAAGGAGTCCCCCGATTCGACCCCCGCCCCCGCCGTCCGCGGCACCGTCCACACCTGCAAGATATGCCAGAAATCCTTCGACCACCAATCAGCGTTCAGAAACCACCAGCGCATGCACACAGGGGAAAAACCATTCTCGTGCAATGTCTGCCACAAGCGATTCTCACAAAAAGGTAACTTGACCTCCCATTTCAAATATCATCTGGGTGACTATAGATTCTTCTGCGAAATATGCAATAAAAGATTTACGCAAAAGTGCATCATGGTGAAACATATGATGACGCACACTGGAGAAAAACCTTACGCCTGTGAAGTATGCAGTAAACAATTTACGCTCAAAGGCAATTTGACTGTGCATTTAAAAACCCATTTGAAATATGAACCTAACAAACAAGAAGGAGAAAAGCCTGTATGCAAAAAGGAGGTGCCACAAAAGACCAAAGTAAAAGATAAAGATCAAACAAAGCCAGGAAAATTATACGAATGCGAAGTATGCAATAAACGTTTTGCACAAAAATGCAATTTAAAGGTCCATTTAAAATACCACACGGAGAGGTTCACTTGCGAGCAATGCAATGAGAAATTCACTCTTAAATCTCAATTGAACGCTCATATTCTTACTCACACAGGGGGGCCGATTCACAAATGTGATGTATGCAATAAGTACTATAAATCGAAAATACTTTTAAATCTCCATAAGAAGATTCACACTGGTGATTATAAGTACACGTGTGACGTATGCAATAAACATTTTGTTCATAAAGATAACATGAGACGGCATATGCGGGTTCATACAGGGGAGAGACCATTCTCGTGCGAAGTCTGCAATAAGGCTTTCGCACTGAAGGCTACTTTACAGTCTCACTTAAAACGCAGACACGGCCAAGGCGACCCGGATGAAGACTCCACCTACACATGTGAGACGTGTAACAAGCAATTCAATAAAAAGGCCGCTTTAGAAAGACACATTCGAACACACACGGGAGAGAAACAACACAATTTCTGCTGCGAAATTTGTGGTAAACAATTTACACAAAAGAACTACTTTTCTAAACACATGGATCTGCACATCGGAAGAAGGCCGTTCATGTGTGAAATCTGTAGTAAAACTTTTACTCACAAAAGCACATTGAAAGCTCACAAATTAACACATTCTGACGAAAAACCCTTCGCCTGCAAACTATGTCCTAAACGATTCCGATTGAACAAAGGTTTGCAAGGCCACATGATGATTCACGAAGGCCTCAAACCGCACACATGCGACGTATGCAGTAAGCAATTTAGACACAAATCCGCTCTAATGGTTCACATACGTCGCCACACAGGACAGAAACCACACTCGTGCGATATATGTAAAAGAGAGTTCATAGTGTTAGCTGAGTTAAAGGTGCATTACCGTAGTCATACTGGAGAGCAACCATATCAGTGCGAAATATGTCATAAGAAATTTGCACGTCCTGACCATTTCAGGAGGCACGTTAAACGCGTTCACAACGAGAAGCCTTCGAAGGCCGCGGCCGCGCAGCCGGTGTCTAATTCTGAATTGAGACGGTATTCGTCGCTGGCGCCGGTTGCGTTGGCGTACCAGCGCTGGCAGGGGATGGGCAATATTTAA
Protein Sequence
MEFLLSCRCCLLRPPEKGIHTLYHHLGKTEIYSDMLRECFDIHLTLGNDECGICEVCVARLRDAKDFKQQVQRSQVELQSRLQGAADAREEVTVKQNKLNIKLEKASGDEAVIREIKLEKSEIEMADGAVVSVALYGSPPTSTPAKSTPAAEKESPDSTPAPAVRGTVHTCKICQKSFDHQSAFRNHQRMHTGEKPFSCNVCHKRFSQKGNLTSHFKYHLGDYRFFCEICNKRFTQKCIMVKHMMTHTGEKPYACEVCSKQFTLKGNLTVHLKTHLKYEPNKQEGEKPVCKKEVPQKTKVKDKDQTKPGKLYECEVCNKRFAQKCNLKVHLKYHTERFTCEQCNEKFTLKSQLNAHILTHTGGPIHKCDVCNKYYKSKILLNLHKKIHTGDYKYTCDVCNKHFVHKDNMRRHMRVHTGERPFSCEVCNKAFALKATLQSHLKRRHGQGDPDEDSTYTCETCNKQFNKKAALERHIRTHTGEKQHNFCCEICGKQFTQKNYFSKHMDLHIGRRPFMCEICSKTFTHKSTLKAHKLTHSDEKPFACKLCPKRFRLNKGLQGHMMIHEGLKPHTCDVCSKQFRHKSALMVHIRRHTGQKPHSCDICKREFIVLAELKVHYRSHTGEQPYQCEICHKKFARPDHFRRHVKRVHNEKPSKAAAAQPVSNSELRRYSSLAPVALAYQRWQGMGNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00654502;
90% Identity
iTF_00658642; iTF_00657468;
80% Identity
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