Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:11702206-11708718[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.2e-05 0.0027 20.0 6.8 1 23 121 143 121 143 0.98

2 16 3e-05 0.0038 19.6 5.5 1 23 149 171 149 171 0.97

3 16 0.0028 0.35 13.4 4.3 1 23 177 199 177 199 0.97

4 16 3.8e-06 0.00048 22.4 0.5 1 23 205 227 205 227 0.98

5 16 1.6e-05 0.002 20.5 3.8 1 23 264 286 264 286 0.98

6 16 4.1e-05 0.0052 19.1 0.7 1 23 290 312 290 312 0.98

7 16 0.0019 0.24 13.9 3.4 1 23 318 340 318 340 0.98

8 16 1.1e-06 0.00014 24.1 5.2 1 23 346 368 346 368 0.99

9 16 8.7e-05 0.011 18.1 0.8 1 23 374 397 374 397 0.97

10 16 5.7e-07 7.2e-05 25.0 1.3 1 23 408 430 408 430 0.99

11 16 6.8e-05 0.0087 18.4 4.3 1 23 438 460 438 460 0.96

12 16 3.1e-06 0.0004 22.6 3.9 1 23 466 488 466 488 0.98

13 16 9.2e-05 0.012 18.0 0.5 1 23 494 516 494 516 0.97

14 16 1.1e-05 0.0014 21.0 4.3 1 23 522 544 522 544 0.98

15 16 0.00027 0.034 16.6 0.7 1 23 550 572 550 572 0.97

16 16 2.2e-06 0.00028 23.1 4.6 1 23 578 601 578 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.2e-05	0.0027	20.0	6.8	1	23	121	143	121	143	0.98
2	16	3e-05	0.0038	19.6	5.5	1	23	149	171	149	171	0.97
3	16	0.0028	0.35	13.4	4.3	1	23	177	199	177	199	0.97
4	16	3.8e-06	0.00048	22.4	0.5	1	23	205	227	205	227	0.98
5	16	1.6e-05	0.002	20.5	3.8	1	23	264	286	264	286	0.98
6	16	4.1e-05	0.0052	19.1	0.7	1	23	290	312	290	312	0.98
7	16	0.0019	0.24	13.9	3.4	1	23	318	340	318	340	0.98
8	16	1.1e-06	0.00014	24.1	5.2	1	23	346	368	346	368	0.99
9	16	8.7e-05	0.011	18.1	0.8	1	23	374	397	374	397	0.97
10	16	5.7e-07	7.2e-05	25.0	1.3	1	23	408	430	408	430	0.99
11	16	6.8e-05	0.0087	18.4	4.3	1	23	438	460	438	460	0.96
12	16	3.1e-06	0.0004	22.6	3.9	1	23	466	488	466	488	0.98
13	16	9.2e-05	0.012	18.0	0.5	1	23	494	516	494	516	0.97
14	16	1.1e-05	0.0014	21.0	4.3	1	23	522	544	522	544	0.98
15	16	0.00027	0.034	16.6	0.7	1	23	550	572	550	572	0.97
16	16	2.2e-06	0.00028	23.1	4.6	1	23	578	601	578	601	0.98

Sequence Information

Coding Sequence: ATGACTGAAAGTGGTTTTGTCAAGGCACAGTCGGATAATCTGCCTAAAATTTATGTGCTCATGATGACGACGTACTTCGCAAATAATTGTGACTTTACGTCCTCTGAACTAAGAGGAGTAAAAGAGGAAGTCACtgtcaaacaaaacaaactcaaTATCAAGTTGGAGAAAGCGTCTGGGGATGAGGCAGTCATACGTGACATCAAGCTGGAGAAGTCAGAAATTGAGATGGCGGACGGAGCGGTCGTGTCAGTGGCATTATACGGGTCACCGCCGGCTTCAACCCCAACACAGCCGACTCCAGGCTCAGAAAATGAGTCCCCCGCCCCGAGCCCGGCCCCCGCCGCCCGCGGCATCGTCCACACCTGCAAGATCTGCCAGAAATCCTTCGACCACCGATCAGCGTTTAGAAACCACCAGCGAATGCACACAGGTGAAAAACCATTCTCCTGCAATGTCTGCCACAAACGATTCTCACAAAAAGGTAACTTGACCTCCCATTTCAAATATCATCTAGGCGATTATAGATTCTTCTGCGAAATATGCAATAAGAGATTCACACAGAAGTGCATCATGGTGAAACATATGATGACGCACACTGGAGAGAAACCTTACGCCTGTGAAgtatgcaataaacagtttacgCTCAAAGGCAATTTGACTGTGCATTTGAAAACACACTTGAAATATGAACCTAACAAACGAGAAGGAGAAAAGCCTGTATGCAAAAAGGAGGTGCCAGAAAAGACTAAAGTAAAAGAAAAAGATCAAACAAAACCAGGAAAACTCTACGAATGCGAAGTATGCAAGAAACGTTTTGCACAAAAATGCAATTTGAAGGTCCATTTAAAATACCACACGGAGAGGTTTACTTGCGAGCAATGCAATGGAAAATTCACTCTTAAATCACAATTGAATGCTCATATACTTACTCACACAGGGGGTCCGATTCACAAATGTGATGTATGCAATAAGTACTATAAATCGAAAATACTTTTAAACCTTCATAAGAAGATTCACACTGGTGATTATAAATACACGTGTGAcgtatgcaataaacatttcgTGCATAAAGATAACATGAGACGGCATATGCGGGTTCATACAGGGGAGAGACCATTCTCGTGCGAAGTCTGCAAAAAGGCTTTCGCATTAAAAGCTACTCTACAGTCTCACTTAAAACGCAGACACGGTCAAGGCGACCCGGATGAAGACTCCACCTACACATGTGAAACGTGCAACAAGCAATTCAATAAAAAGGCTGCTTTAGAAAGACACATTCGAACACACACGGGCGAGAAACAGCACAATTTCTGCTGTGAAATTTGTGGAAAACAATTTACACAAAAGAACTACTTTTCTAAACACATGGATCTGCACATAGGAAGAAGGCCATTCATGTGCGAAATCTGTAGTAAAACATTTACACACAAAAGCACATTGAAAGCTCACAAATTGACGCATTCTGAAGAAAAACCCTTTGCCTGCAAGCAATGTCCTAAGCGATTCCGACTGAACAAAGGTTTGCAAGGCCACATGATGATTCACGAAGGCCTCAAACCGCACACCTGCGATGTATGCAGTAAGCAATTTAGACACAAATCCGCTCTAATGGTTCACATCCGACGGCACACGGGACAGAAACCACACTCGTGCGATATCTGTAAAAGAGAGTTCATAGTTCTAGCTGAATTGAAAGTGCATTATCGTAGTCACACTGGAGAGCAACCATATCAGTGTgaaatatgtcataaaaaatTTGCGCGGCCTGATCATTTCAGGAGGCACGTGAAACGCGTTCACAACGAGAAGCCTTCGAAGCCCGCCGCCGCGCTCAACCGTCCGCCGCAACCGGTGTCTAATGATGAAATGAGACGGTATTCGTCGCTGGCGCCGGTGGCGCTGGCGTACCAGCGCTGGCAGGGGATGGGCAATATTTAA
Protein Sequence: MTESGFVKAQSDNLPKIYVLMMTTYFANNCDFTSSELRGVKEEVTVKQNKLNIKLEKASGDEAVIRDIKLEKSEIEMADGAVVSVALYGSPPASTPTQPTPGSENESPAPSPAPAARGIVHTCKICQKSFDHRSAFRNHQRMHTGEKPFSCNVCHKRFSQKGNLTSHFKYHLGDYRFFCEICNKRFTQKCIMVKHMMTHTGEKPYACEVCNKQFTLKGNLTVHLKTHLKYEPNKREGEKPVCKKEVPEKTKVKEKDQTKPGKLYECEVCKKRFAQKCNLKVHLKYHTERFTCEQCNGKFTLKSQLNAHILTHTGGPIHKCDVCNKYYKSKILLNLHKKIHTGDYKYTCDVCNKHFVHKDNMRRHMRVHTGERPFSCEVCKKAFALKATLQSHLKRRHGQGDPDEDSTYTCETCNKQFNKKAALERHIRTHTGEKQHNFCCEICGKQFTQKNYFSKHMDLHIGRRPFMCEICSKTFTHKSTLKAHKLTHSEEKPFACKQCPKRFRLNKGLQGHMMIHEGLKPHTCDVCSKQFRHKSALMVHIRRHTGQKPHSCDICKREFIVLAELKVHYRSHTGEQPYQCEICHKKFARPDHFRRHVKRVHNEKPSKPAAALNRPPQPVSNDEMRRYSSLAPVALAYQRWQGMGNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654502;
90% Identity: iTF_00660522;
80% Identity: -