Basic Information

Gene Symbol
nfxl1
Assembly
GCA_029618875.2
Location
JAROYD020000005.1:1886462-1906777[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4 5.8e+04 -7.8 5.6 15 19 162 166 161 166 0.81
2 18 0.91 1.3e+04 -2.1 0.9 4 10 197 203 197 203 0.91
3 18 6.4e-07 0.0092 17.6 17.6 1 19 211 228 211 228 0.99
4 18 8.1e-05 1.2 10.9 16.0 1 19 264 282 264 282 0.95
5 18 4 5.8e+04 -4.4 2.3 6 10 307 311 306 311 0.89
6 18 3.8e-08 0.00055 21.5 15.8 1 18 317 334 317 335 0.97
7 18 2.2 3.2e+04 -3.3 0.7 5 10 359 364 359 364 0.91
8 18 3.9e-05 0.57 11.9 12.5 1 18 370 387 370 388 0.98
9 18 0.72 1e+04 -1.7 0.6 1 5 397 401 397 406 0.89
10 18 0.00011 1.6 10.5 17.1 1 18 422 439 422 440 0.94
11 18 2.1e-09 3e-05 25.6 14.7 1 18 449 466 449 467 0.98
12 18 0.00025 3.6 9.3 5.6 10 19 516 525 513 525 0.89
13 18 0.22 3.3e+03 -0.1 8.5 1 12 535 545 528 545 0.85
14 18 3.5 5.1e+04 -3.9 2.2 14 18 573 577 573 578 0.88
15 18 1.2e-05 0.18 13.5 4.6 1 11 614 624 614 629 0.88
16 18 0.001 15 7.4 18.0 3 19 655 671 654 671 0.94
17 18 3.1e-05 0.46 12.2 11.4 1 15 714 727 714 734 0.87
18 18 2.3 3.4e+04 -3.4 0.8 5 10 763 768 763 768 0.86

Sequence Information

Coding Sequence
ATGAGTGATTTTAGAAGAAGACAAGCAAAACCAAGAAACCCTTGGACCATAACACAATCCCAAAAATTGGATGGTAGTCAAAATGGGAGTCGAAACTCAGACAGATTTACAGAAGCTTCAAAAAAACATCAGGCAGCTGCACAGAAATATGTTCTGGATTATGATTCATCTTCTGAAGAAGATGAATTAGAATCTGGAAATATTATTAagattatattgaaagaaTATACATCCACAGGAGTAGAATTGAATAATTTGAAAAGAACAAAAGGCTATCTCGAGGATGCGTTTGTATCAGGAGCTGCTACTTGTCTAATTTGCATATCTCACATCAAGCGTAATGATGCTATATGGAATTGTAGTGAATGTTACTGTAGTTTCCATTTAATGTGCGTTCAGAGATGGTCAAAAGATACAATTTTTAATCAGAAGCAGTTATCTGAAGAACATACACATGTAAGAAATATAAAGATTGCTTGGTGTTGTCCAAAATGCCGACAGGAATATACTCCGAATGATATTCCTACTGAATACAGATGTTTTTGCAAAAAGGCTGTAAATCCAGCATATCAGTATTTACTAATACCTCATTCGTGTGGTAATACTTGTCGTAAAGAACTAAAACCAAAATGTGGTCATCAGTGCGTATTACTTTGTCATCCTGGTCCATGTCCACCTTGTCCGAAGATAGTTAATATTAGTTGTTATTGTGGCAGTAAACCTGCCAAACCTCAAAGATGTTCTAACAAGGAATGGTCATGCGGTTCTGTGTGTAACAAGTTACTAACTTGTAATAAGCACAAGTGTGCTCAACCTTGTCATCCAAGTGAATGTGAACCGTGTCCTAAAAAGAGCATACAAAAATGCCTTTGCGGCTTGAACCAAAAGCTTAGAGATTGTGCTTCACCAATATGGCAGTGTGAGaagaaatgcGACAAACCGTTAACTTGCGGCCACCACAACTGCTTAAAAATTTGTCATTCCGGAGATTGCGGTCCCTGTGAACTTTCAGAACTTAGAACCTGCCCATGTGGTAAATCAACATATCAGTTACCATGTACGGAAGATACTCCCACATGCGATGACACTTGTGGAAAGCTTCTAGAATGTGGTCAACATATTTGCAATCAGAAATGCCACAAGGATACATGTGGATCTTGCGTGGAAATTGTGGTAAAGTCTTGCCGATGTGGACTTCATACCAAAGAAGTTCAGTGTAAGAAGCAATACTTATGTGAAACGAAGTGTAAACAGATGAAGGATTGCAATAAACATCCATGTAACCGCAAGTGTTGCGATGGAAACTGCCCACCATGTGAGAAACCATGCGGGAAAACATTAAGCTGCGGAAATCATAAATGCGCATCCATATGTCATAGAGGCCCATGCTATCCATGTCATCTAACTGAAAATGTTTGCTGCCGTTGTAGTCAGACTTATCTGACGGTACCTTGTGGAAGGAAATACAAAACGCGCCCGCCGAAATGTCTTAAATCATGCTTGGTGCCACCGGAGTGTCATCATTCAAAGCGCGAGAATCACCGATGTCATTTTGGAGATTGCCCCCCTTGTCGACAAGTTTGCGGAAAAATACATGCGAAATGTTCACATCCTTGTCCGGCGCTATGTCATACCTCAGTCCTGGTAAAGATACAAACAAAGAAGGCTACAATGCCCTGGGAGCAAGTAGCTccaattttagagaaaaaaacgCTCCCATGTCCCCATTGTGTTGTACCAGTGCGCGTAACGTGTTTAGGAGAACACGACAACACAGATTTGCCCTGTTACATAGCTAAGCCTTCCAGTTGTGGCAGACCGTGCGGAAGAATCTTAAAATGCGGAAATCATACTTGTCAAATGGAGTGTCATATTATCGAAGGACCGCACGACGTGGTTCGCGCTGGAGATAACTGCGACATTTGTACTAATCCTTGCACTAATCTGCAACCAGACGGATGTAATCATCAGTGTCCTAAACCTTGTCATCCGGATAGTTGCCCACCGTGTACGCAAATGATTCGAATTAGATGCCACTGTGGGTTGAATCAGCCATATGTTGCTTGTAAAGATTGGACAAGCACTGAAGATAAAGAAAACTTACAAAGTTGCGGTAATCAATGTCCAAATAATTATGAATGTGGCCATAGATGCCGTTCTAATTGCCATTCAGGTCCTTGTGTTAATCAAGAAAGTTGTAAGAAAAGGGTTAAAATGACTTGTCCGTGCAAACGCCTCAAAAAGGAGTTCCTTTGCGAATTAGTGCGACAAGGTTCTGCGATGATCAATTGCGATGAAACCTGTGGACAAAAGAAAGTAGAAGAAGAGAAGCTGAAAGAAATACAGCTTGagcagaaaaagaaagaagaagagattaaaaatcaaaaagaattagaaaaatacgaaaaaatgttccagggtaaaaaaaagaatagagaACGTAAAGTtcatgaagaagaagaagtaaaaggcTTTCTCTCCGAATATAAAATTCCTATCTGTTTCGCTGTTTTTGGTGTTCTTTCTGCTCTGGTCTACGTTTATACCTACTAA
Protein Sequence
MSDFRRRQAKPRNPWTITQSQKLDGSQNGSRNSDRFTEASKKHQAAAQKYVLDYDSSSEEDELESGNIIKIILKEYTSTGVELNNLKRTKGYLEDAFVSGAATCLICISHIKRNDAIWNCSECYCSFHLMCVQRWSKDTIFNQKQLSEEHTHVRNIKIAWCCPKCRQEYTPNDIPTEYRCFCKKAVNPAYQYLLIPHSCGNTCRKELKPKCGHQCVLLCHPGPCPPCPKIVNISCYCGSKPAKPQRCSNKEWSCGSVCNKLLTCNKHKCAQPCHPSECEPCPKKSIQKCLCGLNQKLRDCASPIWQCEKKCDKPLTCGHHNCLKICHSGDCGPCELSELRTCPCGKSTYQLPCTEDTPTCDDTCGKLLECGQHICNQKCHKDTCGSCVEIVVKSCRCGLHTKEVQCKKQYLCETKCKQMKDCNKHPCNRKCCDGNCPPCEKPCGKTLSCGNHKCASICHRGPCYPCHLTENVCCRCSQTYLTVPCGRKYKTRPPKCLKSCLVPPECHHSKRENHRCHFGDCPPCRQVCGKIHAKCSHPCPALCHTSVLVKIQTKKATMPWEQVAPILEKKTLPCPHCVVPVRVTCLGEHDNTDLPCYIAKPSSCGRPCGRILKCGNHTCQMECHIIEGPHDVVRAGDNCDICTNPCTNLQPDGCNHQCPKPCHPDSCPPCTQMIRIRCHCGLNQPYVACKDWTSTEDKENLQSCGNQCPNNYECGHRCRSNCHSGPCVNQESCKKRVKMTCPCKRLKKEFLCELVRQGSAMINCDETCGQKKVEEEKLKEIQLEQKKKEEEIKNQKELEKYEKMFQGKKKNRERKVHEEEEVKGFLSEYKIPICFAVFGVLSALVYVYTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00434531;
80% Identity
-