Dsuc010876.1
Basic Information
- Insect
- Drosophila sucinea
- Gene Symbol
- -
- Assembly
- GCA_018150745.1
- Location
- JAECWP010000001.1:289956-295000[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-12 1.5e-08 34.2 0.0 1 40 443 483 443 486 0.90 2 4 2.5e-13 5.7e-10 38.8 0.1 2 39 498 535 497 538 0.94 3 4 1.6e-16 3.5e-13 49.0 0.0 1 45 552 597 552 597 0.98 4 4 8.7e-20 2e-16 59.4 0.0 1 43 604 647 604 648 0.97
Sequence Information
- Coding Sequence
- ATGAGGGCAAGAGTTTTGTGGTATGTGGGATACGAGAGTCCGCGGAATGATGTGGAGGGTCTGCTACGCACCGCCGAACAATTGAAAATCAAAGGACTCTGTGAGACAGCTGAGAATGCCGACGATTTAAATGATGCGGCAACTGCCACAATAACAGTATCGGAGAATATACAACAGGCAGTTGTGGTAAATGGTGAGCCGGCATCGAGGAAAACTCGTCCTAAACGCTCCAAGTCACCGGATCTACAGCAGCAACAACAAGAGCACCATCAGCAACAGCAAACAATTTTGATTCAGGGACAAAACCAAACTTCTATTGTGAGTTTGCATCAGACTGTAGACGGAAACTATATACCCGTGAGTGCCTCAGGGCCGGGTGAAGAATCGGACGTGGAAAACGATCACGACCTCGACCACGTGCACGATCACGTTCACGAGCACGACGAAGACGTGCATGAGAGTAAACCAAATAAGATTTGTAAGACAGAGCAATCACTCGTCTCGCCCACATCGAATTCGTCCAATACTCCGACTCACCATCAAAATGCTGCGGCGCCAGCTGGAGGCGTGAGTGGCACCGGCAACGGCACCAGCGGCATAGCAACAACAACAGCAGCAGGCGGTCAAGCAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGAATGAATGGCGGCCTATTGGGCGTACCTATGGGATTTCTGGACTTCACACCCGAGCCACCAGCACCATCAGCCACACCAGTCACTGTAACGGAACACGTCGATCTCTCCTGCAACCCGAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCACAACAAATCCATCGGCTCGATCAATCTCCTATGCATTCAATCGCCCATCATCATACGGGCGATGAGAGCAACTCGAATTTAGTGCAAGTTCAGCACATAAAAAGACATGTGGCGCATGCGGATATTGGGGGCGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAACATGAACCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTACAATTCAGATACTAGCGAGGATTCCATGATGATTGCGAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAATTTGGATCAAAAACACGGAATTCTTGGCGGCAGCAGCATTTGCGGCCCAGGTGGTGCTGGTGGTGGTAGTGGTGGTGTGGCTGGTGGTGTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGTGGCACGAAATCGTGGAACGAGGATGCATTGCAAAACGCCTTGGAGGCGCTACGAGCGGGTCAAATATCCGCCAATAAGGCATCAAAAGCCTTTGGGATACCCTCATCGACCCTGTACAAAATAGCCCGACGCGAGGGTATCAGATTAGCAGCTCCATTCAATGCCGCCCCAACCACATGGACGCCGGAGGATTTGGAGCGAGCATTGGTAGCAATAAGAGCGGGTAATACGTCGGTGCAAAAAGCAAGTGCTGAATTCGGCATACCTACAGGCACACTTTATGGACGCTGCAAACGTGAAGGGATTGAACTCTCGCGCTCGAATCCTACACCCTGGTCTGAGGATGCCATGAATGAGGCCCTGAACTCAGTACGTGTCGGCCAAATGTCGATCAATCAGGCGGCCATTCATTATAACCTGCCCTATAGTTCACTCTATGGGCGCTTTAAGCGCGGCAAATACGATGTTGTGGCCAATACCAGCGGAGTGTCGCTATTAAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAACATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCGTCACCGCATCCACCGACGCCGCAGCATCATAGCACACCGCAACAGCATCACAGCAGCTCCCAGCAAGGACCGCCAACGCCTCAGCATATGCAGCAGCAGCATGTGGTCCATATGCAGTCTCCACATCAGGGCCATATGGCATCGGGGCATATGCAACAGGATGTGGTTACCTCAAGTAGCCAAGTGGTCCATGGCCAACAGCAGCAGCTTCAGCAGATCTATCAGCATCATGGTACGCCAGAGCGAAGTTGA
- Protein Sequence
- MRARVLWYVGYESPRNDVEGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVVNGEPASRKTRPKRSKSPDLQQQQQEHHQQQQTILIQGQNQTSIVSLHQTVDGNYIPVSASGPGEESDVENDHDLDHVHDHVHEHDEDVHESKPNKICKTEQSLVSPTSNSSNTPTHHQNAAAPAGGVSGTGNGTSGIATTTAAGGQAAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKRHVAHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSSICGPGGAGGGSGGVAGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSQQGPPTPQHMQQQHVVHMQSPHQGHMASGHMQQDVVTSSSQVVHGQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00600231; iTF_00555000; iTF_00523612;
- 90% Identity
- iTF_00555000;
- 80% Identity
- -