Basic Information

Insect: Drosophila nebulosa
Gene Symbol: -
Assembly: GCA_018150735.1
Location: JAECWO010000031.1:215748-220786[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.4e-12 1.7e-08 34.1 0.0 1 40 511 551 511 554 0.90

2 4 2.8e-13 6.2e-10 38.6 0.1 2 39 566 603 565 606 0.94

3 4 1.7e-16 3.9e-13 48.9 0.0 1 45 620 665 620 665 0.98

4 4 9.7e-20 2.2e-16 59.3 0.0 1 43 672 715 672 716 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.4e-12	1.7e-08	34.1	0.0	1	40	511	551	511	554	0.90
2	4	2.8e-13	6.2e-10	38.6	0.1	2	39	566	603	565	606	0.94
3	4	1.7e-16	3.9e-13	48.9	0.0	1	45	620	665	620	665	0.98
4	4	9.7e-20	2.2e-16	59.3	0.0	1	43	672	715	672	716	0.97

Sequence Information

Coding Sequence: ATGAGGGCAAGAGTTTTGTGGTATGTGGGATACGAGAGTCCGCGGAATGATGTGGAGGGTCTGCTACGCACCGCCGAACAATTGAAAATCAAAGGACTCTGTGAGACAGCTGAGAATGCCGACGATTTAAATGATGCGGCAACTGCCACAATAACAGTATCGGAGAATATACAACAGGCAGTTGTGGGTAACATAGTTAATGCCACCATAGTACCAGGCGGATCTAATTCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAAGCTCTGCTTTTGGCGGCAATAACAGCAACCCATTGACCGGGCAATTGCTAAGTTCGAGCAGTTCAGTAAATGGTGAGCCGGCATCGAGGAAAACTCGTCCTAAACGCTCCAAGTCACCGGATCTACAGCAGCAACAACAAGAGCACCATCAGCAACAGCAAACAATTTTGATTCAGGGACAAAACCAAACTTCTATTGTGAGTTTGCATCAGACTGTAGACGGAAACTATATACCCGTGAGTGCCTCAGGGCCGGGTGAAGAATCGGACGTGGAAAACGATCACGACCTCGACCACGTGCACGATCACGTTCACGAGCACGACGAAGACGTGCATGAGAGTAAACCAAATAAGATTTGTAAGACAGAGCAATCACTCGTCTCGCCCACATCGAATTCGTCCAATACTCCGACTCACCATCAAAATGCTGCGGCGCCAGCTGGAGGCGTGAGTGGCACCGGCAACGGCACCAGCGGCATAGCAACAACAACAGCAGCAGGCGGTCAAGCAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGAATGAATGGCGGCCTATTGGGCGTACCTATGGGATTTCTGGACTTCACACCCGAGCCACCAGCACCATCAGCCACACCAGTCACTGTAACGGAACACGTCGATCTCTCCTGCAACCCGAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCACAACAAATCCATCGGCTCGATCAATCTCCTATGCATTCAATCGCCCATCATCATACGGGCGATGAGAGCAACTCGAATTTAGTGCAAGTTCAGCACATAAAAAGACATGTGGCGCATGCGGATATTGGGGGCGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAACATGAACCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTACAATTCAGATACTAGCGAGGATTCCATGATGATTGCGAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAATTTGGATCAAAAACACGGAATTCTTGGCGGCAGCAGCATTTGCGGCCCAGGTGGTGCTGGTGGTGGTAGTGGTGGTGTGGCTGGTGGTGTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGTGGCACGAAATCGTGGAACGAGGATGCATTGCAAAACGCCTTGGAGGCGCTACGAGCGGGTCAAATATCCGCCAATAAGGCATCAAAAGCCTTTGGGATACCCTCATCGACCCTGTACAAAATAGCCCGACGCGAGGGTATCAGATTAGCAGCTCCATTCAATGCCGCCCCAACCACATGGACGCCGGAGGATTTGGAGCGAGCATTGGTAGCAATAAGAGCGGGTAATACGTCGGTGCAAAAAGCAAGTGCTGAATTCGGCATACCTACAGGCACACTTTATGGACGCTGCAAACGTGAAGGGATTGAACTCTCGCGCTCGAATCCTACACCCTGGTCTGAGGATGCCATGAATGAGGCCCTGAACTCAGTACGTGTCGGCCAAATGTCGATCAATCAGGCGGCCATTCATTATAACCTGCCCTATAGTTCACTCTATGGGCGCTTTAAGCGCGGCAAATACGATGTTGTGGCCAATACCAGCGGAGTGTCGCTATTAAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAACATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCGTCACCGCATCCACCGACGCCGCAGCATCATAGCACACCGCAACAGCATCACAGCAGCTCCCAGCAAGGACCGCCAACGCCTCAGCATATGCAGCAGCAGCATGTGGTCCATATGCAGTCTCCACATCAGGGCCATATGGCATCGGGGCATATGCAACAGGATGTGGTTACCTCAAGTAGCCAAGTGGTCCATGGCCAACAGCAGCAGCTTCAGCAGATCTATCAGCATCATGGTACGCCAGAGCGAAGTTGA
Protein Sequence: MRARVLWYVGYESPRNDVEGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGGSNSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSAFGGNNSNPLTGQLLSSSSSVNGEPASRKTRPKRSKSPDLQQQQQEHHQQQQTILIQGQNQTSIVSLHQTVDGNYIPVSASGPGEESDVENDHDLDHVHDHVHEHDEDVHESKPNKICKTEQSLVSPTSNSSNTPTHHQNAAAPAGGVSGTGNGTSGIATTTAAGGQAAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKRHVAHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSSICGPGGAGGGSGGVAGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSQQGPPTPQHMQQQHVVHMQSPHQGHMASGHMQQDVVTSSSQVVHGQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00604006;
90% Identity: iTF_00604006;
80% Identity: -