Dsub009919.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- -
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001730.1:1194778-1198762[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6e-05 0.0062 17.0 0.1 1 23 165 188 165 188 0.96 2 13 0.0018 0.13 12.9 3.1 2 23 237 259 233 259 0.90 3 13 0.0079 0.57 10.9 0.8 1 23 349 372 349 372 0.93 4 13 0.35 25 5.7 5.4 2 23 421 443 420 444 0.95 5 13 0.0015 0.11 13.2 0.6 1 23 508 531 508 531 0.88 6 13 0.00072 0.052 14.1 3.3 2 23 582 604 582 604 0.96 7 13 0.00058 0.042 14.4 0.0 1 23 689 712 689 712 0.95 8 13 0.00073 0.052 14.1 0.2 1 23 773 796 773 796 0.93 9 13 0.0012 0.087 13.4 2.2 2 23 846 868 845 868 0.97 10 13 0.0034 0.25 12.0 3.8 1 23 959 981 959 982 0.94 11 13 0.055 4 8.2 1.5 1 21 1034 1054 1034 1055 0.95 12 13 1.5 1.1e+02 3.7 0.1 2 15 1096 1109 1095 1120 0.64 13 13 2.9 2.1e+02 2.8 2.3 1 22 1137 1160 1137 1161 0.62
Sequence Information
- Coding Sequence
- ATGGAAGGAATGGACCTTTGGACATCCATGTTCTCGGCTGACTTTGAGGAGGGCGAGGAGGAAATCGAGCAATATGCGAATGAAAACGGCCTGGACAGCAATCCTGTCGGCGACGGTGATGACATTCTGCCCGaagatgatgataatgatgcgGAAGACgatgagcaggagcagcaggaggaggaggaggaggaggagggaacTGGCCGTggcaatggaaaaacaaaagagccCGATTTAGATGATGATGCCATATTTGATTTCGATCTGGAGCCGATTGTAAGCATTGGCGAGCCAAAGACCCCTCCACTGCTGGCGCCTACTGTTCCACTTGGCTCACCTGTGCGTCCCATGCATCGCCACTCACTGCCCGCCAGGCAGGGTCGGCCCAAGGAGGTGTGTCTGTCGGGAGTGCTCACGCGGCCCACCACCTCGCAGATCAATGCAACCGATGCGAACGGGATTCCCATCAACTATGAGCTGGGCGTCATCTATATCTGCCCCGCATGCGGAGCGGAATTCCGGCAGCAGGATCTCTGGAAACGCCACATGAACCAGATGCACCAGTTCAACACGCGGCGCGGCCTCAACTTCATGGCCATGGACAAGCTGTATCATCGGTGCCTGGAGTGCAACAAGCGCATCGCCATGCACAGCCGGGAGAACCTGCTGAAGCACAAGTTCACCCATTTGCCGTTTAGGTGCACCAAGTGCTACATCTGCAAACGGGAGTACAAATACAGACAAGACCTGATGGTTCACCTGAGGATGGTCCATTGCGACGAAGTGGTGGCTATGATGCGGGAGGGCTTCAACTTGGCGGGACGCAAGACACGGGTACGGGAGCCGCGCACAGAGCAAATGCAACGCAAGGACCCGTTCCCAGAGGAGGATGATGAGCAAAACGATCTTCCCGAGCCGGAGACTGAGACTATGCCACCCACTGTTCTGGAGGAGGAAGCTCCGCAGAGGCGTCGAAAAAAGCGCTACCAAGGAGGTCCCTCTGGCGACGGAGGTGCAGATCTTTGCGAGGATTATATCCACTACATGTGCCCCGATTGCGGCACTGAGTGCGACACCCACGCCCAGTGGAGTCAGCACATTGAGTTTGTGCACGACTACGTCAGCCGCAGGGGTCTCAACTTCATCAGCGTGGACATGCAGATGCAGTGCCTCGAGTGCAAGAAGATTGTCATCCCCAACACCATTAAGACGCTGCGGGCCCACAAGTTCACGCATCTGCCGCAGCCCGAGTGGCTGCGCTGCAAGCTGTGCTATAAGGGCTACACGGAACACCACGAGCTGGTCAGTCATCTGCTGAAGCAACACCACCTAGAGTCGCTGATGACAGAGGAGTCGCCGGATGCATCATCAGTCAAAAGGACAGAGGGCGCAGGCGACGACTGGGAGGAGGACAATGGAAACGGCAGCGTCTTCGATGACGTTTCACCGCACTTTGAGGATGTACCCCGACGGGGAGGCCGCATCGGGAGCGATGACATGTACGAGCCACACATCGACTACCTATGTCCGCAGTGCGGCAAGGAGTTCATCGAGAAAAAGCACTGGCGCACCCACGTGGTGCAGGTGCACGGCATGAACGATGTGACGAAGCTGAACTTTGAGATACTCAACGACCGCCAGCTAAAGTGCACGGAGTGCGCCAAAATCATAACGAACGCATACGGCATACAGAATGCCCAGCAGCACAGGATCACGCATCTTCCATTCAAGGCATACGCCAGGTGCCGCAAGTGCCACAAGTCGTACACGGATCGCAAGGGTCTGGTCAAGCATCTGGCCACCTACCATCGCGTGGGTTACGCGCCGcgtaaaaatttcaaaatggcCGGACGAGGAGCCCGGCTGTTTGGGTCGcccaagcagcagcgcaaACAGATTGTGACCCTGGGAAAAGATACCTACGAGATAATCTTCCTGGACGAAGAGCAGACGCACTCAAGTGTAGACGAGGAGAACGACTTTGGAGAGCAGATGCAGATGGCGGATGAGGAGGACTTGCCCACTGTCAGTAGCGGCCTGCCGCCGCCAAATCCGCATCGCTACAAGTGCGTGGAATGCGGAACATTGTTCCCCACTCAAGTGGCTCTCAAGTTGCACATCAGTGAGGCACATACACATGCGTTGCGGGATCCCCCTCAGTACGGGGGATCGAAGAAGTTTGACCAATCCCAGGGCACAGACGAGGCATCCAAGAAGAGGAGATTAGGAGcgggatcagcagcagcattaacaACATCACCATCAGCGGCCACAAGCAGCCCATCGTCGGGCACGGTCGAGCAGAACTACATATTCCTGTGCCCCTCGTGCGGCGAGGAGTACAAGACACAGTTCGAGTGGCGCCGTCACATCAACGAGGCGCACAACTTCGACAAACGGCAGTATCTGAATATGCGGCAGCTGGACAAGTACCGCTACCAGTGCACCCAGTGCAACGACATTGTGTGCAACTCCAAGTTGAAGGGCCTGCAGGACCACCACTTCCGGCATCTGCCCTTCCGCCTGTACCTCAAGTGCCTCGTGTGCGGCACCTGCTATAACCACAAGCCCAACATTGCCGCCCATCTGCGGACGCGGCACAACATCTACGAGCGTGAAACGCCATGGCGGGAGCTGCAAACCAAGCCCCAGTACTCGTATGTGCAGTCCAAGGAAAAGGACAGGGATACGGTCGCCAAAAGCAGGCCACAATCACCCTCGCCCGCAGTTGTCGCCTCTTCCTCGGGCTCCAGCGTCAGCAGTCGCCCGCTCTGGCCGCAGTCCGAGAAGCGTCCCACACGGCCGGCCGGACTCAACACCCTGGAGGACAGCATCTCATACCACAATGCGGTGGACATGGACTTCATCACCTACTACTGCCCCAAGTGCAACAAGAATTTCGACTCTCATGCCTTCTGGCGCAAGCACATCGTGGAGCACCACAACTTCAACAGCCGCGAGGGCCTAAACTTCCGGCAGATTGACATCCACCACTACTTGTGCCTGGAGTGCTACAAGCGTGTCACCGTCACCCATACCAAGGGCGCCATCGGGCAGCTGCAGTCGCACAAGTTCCGCCACCTGCCGTACCGCTCCTTCAAGTGTCTCACCTGCAACGGAGAGTTTGTCCGCAAGCAGATGTTCTTCAAGCATCTTAATCGGGACACCAATCGGTGCGACAACAAGCCCAGCGCCGAGAAGGTGTTTGATGACGAGGAGCAGGAAACGGGTGGCGTTGCCTCCGCCGAAGATGAAGACGTAGAAGCATCTGCCTATCGACTTATGTGCCCCCAGTGCGGCGACGACTTCACCACCAGCAGCCAGGCGGTATGGCGCAACCACCTTAACGTCTCCCACGGCCAGGGCAAGCAGCTTCTGCATATACGGAAGGTGGGCGAGGGGCTCTACCGCTGCTACGACTGCGGCGAGGAGTTGGCTACGAAGAGCAAGTGtgtcctgcagcagcaccgctTCAAGCATATGCCCCATGCCGCCTACATTCTTTGCCAACTCTGCGAGAGCGGGCCGGATGAGAAGGCGGCTGAAGTGCACAGCATGCAGGAGCTACATCAGCACATCCGCGAACACCATCCTGCAGTGGAAGAGAGCGACGAGAGGATGCAGAAGGTGCGCCAACTCATagacgaggaggagaccgACGAGGACAGTGAGACACCAGCAAACAGCGACAATGGATCTGGCTCGATGGCGAACAATGGTCCGTatatgccgctgccgccgcatTTACTGGATGAGGTGGACGATTTGGATTTCGAGGGTCAGTATCTGCTGGGCTAG
- Protein Sequence
- MEGMDLWTSMFSADFEEGEEEIEQYANENGLDSNPVGDGDDILPEDDDNDAEDDEQEQQEEEEEEEGTGRGNGKTKEPDLDDDAIFDFDLEPIVSIGEPKTPPLLAPTVPLGSPVRPMHRHSLPARQGRPKEVCLSGVLTRPTTSQINATDANGIPINYELGVIYICPACGAEFRQQDLWKRHMNQMHQFNTRRGLNFMAMDKLYHRCLECNKRIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMVHCDEVVAMMREGFNLAGRKTRVREPRTEQMQRKDPFPEEDDEQNDLPEPETETMPPTVLEEEAPQRRRKKRYQGGPSGDGGADLCEDYIHYMCPDCGTECDTHAQWSQHIEFVHDYVSRRGLNFISVDMQMQCLECKKIVIPNTIKTLRAHKFTHLPQPEWLRCKLCYKGYTEHHELVSHLLKQHHLESLMTEESPDASSVKRTEGAGDDWEEDNGNGSVFDDVSPHFEDVPRRGGRIGSDDMYEPHIDYLCPQCGKEFIEKKHWRTHVVQVHGMNDVTKLNFEILNDRQLKCTECAKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYAPRKNFKMAGRGARLFGSPKQQRKQIVTLGKDTYEIIFLDEEQTHSSVDEENDFGEQMQMADEEDLPTVSSGLPPPNPHRYKCVECGTLFPTQVALKLHISEAHTHALRDPPQYGGSKKFDQSQGTDEASKKRRLGAGSAAALTTSPSAATSSPSSGTVEQNYIFLCPSCGEEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCNDIVCNSKLKGLQDHHFRHLPFRLYLKCLVCGTCYNHKPNIAAHLRTRHNIYERETPWRELQTKPQYSYVQSKEKDRDTVAKSRPQSPSPAVVASSSGSSVSSRPLWPQSEKRPTRPAGLNTLEDSISYHNAVDMDFITYYCPKCNKNFDSHAFWRKHIVEHHNFNSREGLNFRQIDIHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPSAEKVFDDEEQETGGVASAEDEDVEASAYRLMCPQCGDDFTTSSQAVWRNHLNVSHGQGKQLLHIRKVGEGLYRCYDCGEELATKSKCVLQQHRFKHMPHAAYILCQLCESGPDEKAAEVHSMQELHQHIREHHPAVEESDERMQKVRQLIDEEETDEDSETPANSDNGSGSMANNGPYMPLPPHLLDEVDDLDFEGQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474795; iTF_00611634; iTF_00564235;
- 90% Identity
- -
- 80% Identity
- -