Dsub012065.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila subobscura
Gene Symbol
sip1
Assembly
GCA_008121235.1
Location
NC:4398160-4401245[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.3e-93 2.8e-89 298.9 14.4 4 275 409 675 406 675 0.98
2 2 0.062 4e+02 -0.1 0.1 157 200 687 727 680 731 0.70

Sequence Information

Coding Sequence
ATGTCGGACAACGAGTACGAGCGTTTTGAGATCACCGACTACGATCTGGACAATGAGTTCAATACGAACAGACCACGCGGGCGGCACAGCAAGCATCAGCAGATCTATGGCATTTGGGCGGACGACAGCGACGAGGAGAGCCCCGGCGAAGGTGGCGGCAAGAAGCGGCATGGCCGCCAAACCAAGGACTACACAATGCCCGTGAATTTTGTGGCCGGCGGCATACAGCAGGCgggcaaaaagaagaaaaagttgATCAAGGGTGAAGAAAAAGCCGGCAAGGAGGAGGCTGACGACGCCAAAGCAGCCGAGAAGAGCGACGACTCGGGGGAGAGTGGACGCCCGGCCTTTGGGCAGAGTGACCCGAGTTCAAACAGctccgaggaggagcaggagcaggagcgacCCTCAATGAGGGCGAAACCCACGTTCCAGCATCACTCGCACATCGCTGGCACGCGAAATGTGGGCGCCTGGGAGCAGCATACGCGCGGCATTGGCGccaaattgctgctgcagatgggCTACGAGCCGGGCAAGGGTCTGGGCAAGGATCTGCAAGGCATTTCGCAGCCGGTGCAAGCGCACGTGCGCAAAGGACGCGGCGCCATTGGCGCGTATGGCCCCGAGACCGCGGCCAGCATTGGCGGCAAGGCGCAGGCCATCAAAGTGGACGAGGATGTGCGTGAGGCGAAGGAGTTCAAGGAGCAAATGAACAAGTGGCGCAAGGGAGGCGTGGCAGAGCCGCAGGAGAAGTCCGGCAAGCGCTACTACTACAAATCCGTGGAGGAGGTAATAGCCAAGGGCAAGAAATCGACGCACCTACTCTCTGAAAAGCTTAGCAAGCAGTTGGGCAACGTGCCCGTCATCGATATGACGGGACCGGAAAAACGTGTGCTCAGCGGCTACCATGCGCTCGGGCAGACCAAAATCACACCCGAGGAGTCGCTCTACGATGCGGAGGCAAGCGGTGCATCCGTCCCCGTGTTCGCCCTGCCCGAGCTGACGCACaacctgcagctgctggtgagCCAGTGCGAGCAGCAGATCATTGCCATTGACAAGTCGGAGCGGGAGTCGGAGAGCCAGCAGACGGCGCTCCAGTGCGAGTACAAAAAGCTTGAGGAGATTGTCCACCTGGAGCGGAATCACATCAGCACTCTCGAGGCGGTGCTCGTGAGGGTGGAGCGGCTGAGCGAGGATCCTGACATTACGCTGCATGCCGCGGAGCAGCtgtttctgcagctgctggaggactATGCCGCAGAGTTCAAGGAATTCGGACTGGCTGATCTCGCCGCTGGCGTCATTGCGCCGCTGGTGAAGCGAGAGTTGGTCTCGTGGCAGCCCCTCGAGGCGCCCAcacagccgctgcagctgatCAAAAAATGGCGTGGAATGCTGCAGCGCGAGGAGcccgcagagcagcagccacgcaaTGTTTTCGATCCATATTCGTCGCTGATTTGGGCGGGCGTGATGCCCTCGTTCCGCGCCTGTGCCGCGCTCTGGCAGCCCAAGGAGCATCCGCCAATGGCTGCCCTACTGGATGCCTgggcgccgctgctgcccacgTGGGTGCTGGACTCtgtgctggagcagctggtgctgccgcgCCTCGTCACGGGCGTCTACGATTGGGATCCGCTCACGGACACTGTGCCCATCCACAGCTGGGTGCTGCCTTGGCACGCAATTCTCGGCAGCAAGCTGGAGGAGTCGGTTTACCCGCAGATACGCAGCAAACTGGGCGTGGCGCTGCAGGCATGGTCTCCACAAGATCGATCCGCGCGTGCCATGCTGACACCTTGGGCCAAGGCCTTTCCGGAGGAGGAAATGGTTGACTTTCTGCAGCATCACATCACGCCCAAGCTGCAGGGTGTGCTCTCCGAGTTCATCATCAATCCGCTGCACCAGGACCTGGAGCAATGGAACCAGGTGTGGGAGTGGCACGAGCTCATACCGCCCATGCACATggccaagctgctggacaagCATTTCTTCCCACGCTGGATGCAGGTGCTCGTCATGTGGCTTAACCAGTCGCCCGACTATGCGGAGATCTCGCGCTGGTACACCGGCTGGAAGAGCATGCTGAATGAGTCGCTGCTCAGGGAGCCCAGCGTCAAAGAGCATCTACGTCGTGCGCTCGAAATGATGCATCGAGCCAGcgatgcgctgctgcagcccacggcagcaccgccaccacccACGCCGCCAGCACCGCCCACTGTGGCGGGTCTGCTGCCGCCACTCATGATGATGGATGTGGCACCGCCCACCCAGCTGGAGTTCAAGGAGTTGGTCTCGCAGAAATGTGCAGAGTTGGGCATCATCTTTGCTCCGCTACCAGGGAGGAGAGAAATGGGCAAGCAGATTTATCGCGTGGGCAAGCTCTTTTGCTACATCGATCGCAATGTCTGCATGCTGAGCGATAGTTCCTTCAGCAACTGGCAGCCAGTAGCGCTCAATCATCTGCTGGAACGCACACAGACGGGTTTGTTCTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNTNRPRGRHSKHQQIYGIWADDSDEESPGEGGGKKRHGRQTKDYTMPVNFVAGGIQQAGKKKKKLIKGEEKAGKEEADDAKAAEKSDDSGESGRPAFGQSDPSSNSSEEEQEQERPSMRAKPTFQHHSHIAGTRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIGGKAQAIKVDEDVREAKEFKEQMNKWRKGGVAEPQEKSGKRYYYKSVEEVIAKGKKSTHLLSEKLSKQLGNVPVIDMTGPEKRVLSGYHALGQTKITPEESLYDAEASGASVPVFALPELTHNLQLLVSQCEQQIIAIDKSERESESQQTALQCEYKKLEEIVHLERNHISTLEAVLVRVERLSEDPDITLHAAEQLFLQLLEDYAAEFKEFGLADLAAGVIAPLVKRELVSWQPLEAPTQPLQLIKKWRGMLQREEPAEQQPRNVFDPYSSLIWAGVMPSFRACAALWQPKEHPPMAALLDAWAPLLPTWVLDSVLEQLVLPRLVTGVYDWDPLTDTVPIHSWVLPWHAILGSKLEESVYPQIRSKLGVALQAWSPQDRSARAMLTPWAKAFPEEEMVDFLQHHITPKLQGVLSEFIINPLHQDLEQWNQVWEWHELIPPMHMAKLLDKHFFPRWMQVLVMWLNQSPDYAEISRWYTGWKSMLNESLLREPSVKEHLRRALEMMHRASDALLQPTAAPPPPTPPAPPTVAGLLPPLMMMDVAPPTQLEFKELVSQKCAELGIIFAPLPGRREMGKQIYRVGKLFCYIDRNVCMLSDSSFSNWQPVALNHLLERTQTGLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00487285;
90% Identity
iTF_00603334;
80% Identity
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