Dstu012509.1
Basic Information
- Insect
- Drosophila sturtevanti
- Gene Symbol
- -
- Assembly
- GCA_018150375.1
- Location
- JAECWJ010000596.1:931402-934579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00075 0.053 13.9 7.1 1 23 160 183 155 183 0.98 2 16 0.00015 0.01 16.2 2.7 1 23 212 235 212 235 0.97 3 16 0.002 0.14 12.6 3.3 1 23 287 310 287 310 0.96 4 16 0.0055 0.39 11.2 1.8 2 23 364 385 363 385 0.97 5 16 0.81 57 4.4 1.5 1 20 503 522 503 524 0.81 6 16 0.014 0.98 9.9 1.3 1 23 533 555 533 555 0.94 7 16 9.7e-05 0.0068 16.7 1.1 1 23 562 585 562 585 0.96 8 16 0.0002 0.014 15.7 0.9 2 23 594 615 593 615 0.96 9 16 0.00036 0.026 14.9 0.1 2 22 642 662 641 665 0.90 10 16 0.1 7.2 7.2 0.8 1 23 701 724 701 724 0.96 11 16 3.8 2.7e+02 2.3 0.2 3 22 733 752 732 752 0.93 12 16 0.01 0.72 10.4 1.4 1 23 761 784 761 784 0.95 13 16 1.4e-05 0.001 19.3 0.5 1 23 811 834 811 834 0.97 14 16 0.2 14 6.3 0.2 1 23 844 866 844 866 0.93 15 16 5.7e-05 0.004 17.4 3.7 1 23 872 894 872 894 0.99 16 16 5.9e-06 0.00042 20.5 3.2 1 23 900 922 900 922 0.98
Sequence Information
- Coding Sequence
- ATGACAAGAACCTGCCGAATTTGCGCTGGAGATGGAGGACGATTTTGGATGGAGACTCCCGTGGAGAAGTACGGCGGGAAAACGTTTAGTCAGTTGCTTCTAGATCTGACCAAAATCGAGATGACCATGGCACAGGCGGAGAAGCTAACTCCCTGGATATGCCGCAGTTGTGCGCATAAACTGCAGCATTCCTTTGATTTTGTTTTAAAAGCCAAAAAGACACACGAGATTTTGGTCGCTAGAATGAAGGAGCCAATTGCTGTGGCCAAAGCAAATTTGACGCTGGAAGATGAAGATTCATTTTGCCTTCGTGAGACTCCTATACAGCTAATGGAGATTGAGGGGGTGACTATTAAAATGGAAGATTCCGAGCCAACTGCTGTTAATGCTGATGATGATACGGGACCGCCTTATCCAGTGCCCGATCCTCTACGTTCTGTCAAGGCCAATTCTCTGGCTTTTGCTCACTTGAAGAAGCATAAATGTAATCACTGCAGTAAAGCATTTAGATACATCACAAATCTCTACAGGCACAAACAAACGGAGCACAATTCAATAGATCAAATTAAGAAAAATGTCAAGAAACTATTAAGAAATCGCCAGGATGTTGAGGAAAAAGATGATGATAACTATTACAAGTGCGATCAGTGTGATAAATCTTTCAAATATGTTATGCTACTGGTTAAGCACAAGCAAAAGTTTCATGGAGTCGCTCAAATGCCATCAAGTCGGGGACCGGCAGTGACAACGGCAACTCCCCAGTTGAGACCAAAGCTGAACACTGATTCCTTGGTTCACAGCCTTATCAAGGCAGTGGAAATTTCAGATGAGGATGATAACTCTAGTTTGGATAACTACTACAAATGTGATCAGTGTGAGAAGTCCTATAAATACATTGTTAGTCTAATCAAGCACAAGCACAAGGATCATTCGGAGAATGATAAAAACTCCGCTGACGACGATGACCAAGCCCAGGCATCCACATCCAACTTTTCTAACAATAGCGTTGCCTCAAAGCCTTCACGCATCAATCGCCGGCTTCAGGATTTTGATTTGCATCGTTGTCAACCAAATGGTTCCAAGGAGATTAAATGCATGATCTGCTTACGTCGATTTGTCAAATTGGGTGAACTGCGTCAGCATCTGAAACATCATCCCGTTGATTTCGATTTCGAGGCCCATGGCGAACCAATTGAACGCATAGCCGAGGGTTTCTTTAAAACCGCTGTAGAATCCACAAAAGAAGGTTTAAAACGTCGCATTCTTAAGGATCTGGAAATAGGCTTGTATGGGCGTTACTACTCCATAACCAACGAAGCACGCTATGAGATGAGTCTCGATAGTTCTGATACGGATAGCGATGGTGGCGATGCCGATGCCCAAGTGATAATACGACGCAGCTATGCATGCGAATTGTGCGACTCACCGAAACAGCCGTCCAAGTGGCCCCGTAAATATCAATTGCATGAACATCATAGGCAACATCATTCCTGGTTAGAGGCACCCTATGTTTGCCATCGTTGTGATTCTCGCTTTTTAAACGAGCAACTTCTGGAACATCATACTAGCCAATTATGTAATAATACGTTGAAACGTTTTCAATGTGATAAATGTCCTCAACGTTTCTTTTGGCGCAAGAATTTACGCTCACATTTGGTAGATCATAAAGATAAGCAAGAAAATTATCCGTGTGATCAATGCCAGCGTAGTTTTCAGGATAAAAGCTCAGTAACTAGGCACAAATTAATGATGCATGCAGATGGAAAAAGTCAATTGATACCCTGCCGTTGGTGCACAAGGGTTTTCTATAGGCCGGCCCTGCTTCATAAACATCTCCAGCGTCATGGGTTTAGTGGTGAAGACTTGCCCTTGGCTGAAACATTGCTGGCCGATGCAGCTAAGCCTTTGGGACCAAAGAACATTCAATGCAAATTGTGTGATCTTCGATTCGTTAGTATTGCGGATTTGCGTCGTCATATGGTCATGCAAGGGCATGCTGGTCAGGCTTCTAGCTATATGATCAGTACTGAAGCTGGATTTGAACTGCAACTGGATGATACAGATGATAGTGACGATGACGACGGGCATACAAAAAGATCTTACACTTGTGATCTCTGCAAGATGAAACTTCCACGCAGGCGTGAGATGAGTGAGCATCAATACTCGTTGCATACTTTTGATAAACTGCCGCACGGATGCGATCAGTGCATATATAAAACTGTGGATAAAGTTATGCTTGAACATCATCAAATGACTCAGTGTCAAAACAAGGAAAAAAAATTTATTTGTTCGCATTGTGGTTACAGATTCATGTGGCAAGAGAATCTTGACCAGCACTTGTCCAGTCAGCATCCTAAGCACAAAATTAATATAAGCAGTCAAGAACAACAGTCCCAAAGTTCTTCCATTCGGCGAAAAAGACGTTTTAGATACCAATGCCCACATTGTTGGCGCTCTTTTGTCGTTCAACCTAGTTTGGATAAGCACATCAGGGACATGCATGTGGCTAAAAAGAATCCTGGAAAGAAGTATCTCTGTTCCCTATGCGGTCTGGAATCGCTAACGCCCAATAAACTCAGCATTCATATCCGACGTCATATGGGCGAAAAACCCTTCAAATGTGATCTCTGTGACATGCGTTTTACTGTTCATTACGAATTGAAAGTGCATCGACGAAAACACACGGGGGAACGACCATATCAGTGTACGTTCTGTGACAAGCATTTCGCTCGACCCGATAAACTGAGACGTCATGTCTATATGCACAGCGATAAGCGTCAGTGA
- Protein Sequence
- MTRTCRICAGDGGRFWMETPVEKYGGKTFSQLLLDLTKIEMTMAQAEKLTPWICRSCAHKLQHSFDFVLKAKKTHEILVARMKEPIAVAKANLTLEDEDSFCLRETPIQLMEIEGVTIKMEDSEPTAVNADDDTGPPYPVPDPLRSVKANSLAFAHLKKHKCNHCSKAFRYITNLYRHKQTEHNSIDQIKKNVKKLLRNRQDVEEKDDDNYYKCDQCDKSFKYVMLLVKHKQKFHGVAQMPSSRGPAVTTATPQLRPKLNTDSLVHSLIKAVEISDEDDNSSLDNYYKCDQCEKSYKYIVSLIKHKHKDHSENDKNSADDDDQAQASTSNFSNNSVASKPSRINRRLQDFDLHRCQPNGSKEIKCMICLRRFVKLGELRQHLKHHPVDFDFEAHGEPIERIAEGFFKTAVESTKEGLKRRILKDLEIGLYGRYYSITNEARYEMSLDSSDTDSDGGDADAQVIIRRSYACELCDSPKQPSKWPRKYQLHEHHRQHHSWLEAPYVCHRCDSRFLNEQLLEHHTSQLCNNTLKRFQCDKCPQRFFWRKNLRSHLVDHKDKQENYPCDQCQRSFQDKSSVTRHKLMMHADGKSQLIPCRWCTRVFYRPALLHKHLQRHGFSGEDLPLAETLLADAAKPLGPKNIQCKLCDLRFVSIADLRRHMVMQGHAGQASSYMISTEAGFELQLDDTDDSDDDDGHTKRSYTCDLCKMKLPRRREMSEHQYSLHTFDKLPHGCDQCIYKTVDKVMLEHHQMTQCQNKEKKFICSHCGYRFMWQENLDQHLSSQHPKHKINISSQEQQSQSSSIRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHIRRHMGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCDKHFARPDKLRRHVYMHSDKRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501246; iTF_00556012; iTF_00577958; iTF_00591138; iTF_00483888;
- 90% Identity
- -
- 80% Identity
- -