Dsor012238.1
Basic Information
- Insect
- Drosophila sordidula
- Gene Symbol
- MBD2
- Assembly
- GCA_035047465.1
- Location
- JAWNPQ010000219.1:269862-271389[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-22 3.4e-19 68.2 0.1 1 74 9 77 9 80 0.94 2 2 5.1e-05 0.071 12.6 0.1 27 76 178 236 162 237 0.89
Sequence Information
- Coding Sequence
- ATGCAAATGAATCCGAGCATCACAATCGAGAGGAAACGCGTTGATTGCAACGCATTACCAAAGGGTTGGCAGCGCGAGGAAGTGCACAGGAAATCCAGTTGCAGCACGGGCGTTGACGTTTTCTACTACAGTCCCACAGGGAAACGCATTGAAAGCAAACCGCAATTAGCACGCCAATTGAGCGCCGAGATGTTTGACATCAGCAACTTTGACTTTCAAACcggcaaaatgcaaatgcaacggCAAATGCCATCGCCATCCATATCCCTATATCGTTGCAATGCAGCGGGCGCCATTATCGGCAATGCGGGCCTTGGTGGCAACGCTGCCAATGCGCTCAAACGTAAATATAGTCGAGTTCAGGCGCAAagctccaacaacaacaacagcagcatcagtgGTGGTATTGCAGCATcgataacagcagcagcagcatcgatgacagcagcggcggcaacaacaactgcgggGGCTGCAGTTAATctacgccagcaacaacaacaacagcagcaacaacaatttgaattcAGCCGTGCTCTGCGCACAGATGTCTCCCTGGTGCCGCCCATTCGACAGACCGCTTCCATATTCAAGCAACCGGTGACCGTGGTGCGCAACCATGAGCCCAGCAAGGTGAAGCACGATGCTAAACACGGTGGCCAGGAGAAGCCCAAACAGCTGTTCTGGGAGAAGCGGCTGGAGCGTTTGCGTGCCTGCCACGACAACGGCGACGAACTGGACGATATATCACTGCCAAAAACCATACGCACCGTTGGACCCAATGTCAATGAACAGACTGTTTTGCAATCGGTTGCCACGGCGCTACATATGCTCAATGCCGGCGTCCATGGCCAGAGCTCGACAAAAGCTGAGCTGACCAAGAATGCAATGGCATTCATGAATCCCGAACAGCCGTTAATGCATGCGGTCATCATATCGGAAGATGATATACGCAAGCAGGAAGAtcgcgtgggcgtggcacgaaGAAAACTACAGGATGCGCTCAAGATATGA
- Protein Sequence
- MQMNPSITIERKRVDCNALPKGWQREEVHRKSSCSTGVDVFYYSPTGKRIESKPQLARQLSAEMFDISNFDFQTGKMQMQRQMPSPSISLYRCNAAGAIIGNAGLGGNAANALKRKYSRVQAQSSNNNNSSISGGIAASITAAAASMTAAAATTTAGAAVNLRQQQQQQQQQQFEFSRALRTDVSLVPPIRQTASIFKQPVTVVRNHEPSKVKHDAKHGGQEKPKQLFWEKRLERLRACHDNGDELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKAELTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00593092;
- 90% Identity
- iTF_00561029; iTF_00588837; iTF_00538221; iTF_00495854; iTF_00506101; iTF_00530944; iTF_00526567; iTF_00550887; iTF_00490771; iTF_00563168;
- 80% Identity
- -