Druf007901.1
Basic Information
- Insect
- Drosophila rufa
- Gene Symbol
- MBD2
- Assembly
- GCA_018153105.1
- Location
- JAECXS010000001.1:18782686-18784312[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-22 8.3e-19 66.8 0.0 1 74 8 96 8 99 0.94 2 2 2.5e-06 0.0076 15.6 0.0 27 76 197 257 178 258 0.91
Sequence Information
- Coding Sequence
- ATGCAAAACCCGAGCGTCACAATTGAGCGCAAACGCGTCGACTGCAGTGTCCTGCCGAAAGGATGGCAGCGCGAGGAGGTCCGCAAGTCCGGCAGCAGCTCCAATAGCAACGCCAGCGCACCCAACACCAACACCACCACCACCGCCAGCAACAACAACAACAACAAGGTGGATGTTTTCTACTACAGTCCCACAGGAAAACGGGTCGAGAGCAAGCCGCAGCTGGCGCGCCAATTGGGCGGCGAGTCCTTCGACATCGCCAGCTTTGATTTCCAGTCCGGCAAGATGCAGCAGCAGCAGCAGCAGCAACACCACCAAAGGGCGCTGCCCTCCCCCTCCATTTCGCTGTACCGCTGCAGCGCCATGCCGCTGCCGTTGACGGGCAGCGGTGGCAGTGGCGGCCACGGATCGGCGGCCAATGCCCTCAAGCGCAAGTTGGCCCGCTCGCAGCTGGGCAGCCAGGTGGGCAGTGCGGGATCTGGCTCGGGAACAGTAGCCACAGCAGCAGCGGCGGCAGCAGCCGCCTCCTCCTCCTCATCCTCCTCGCCCACGGCAGCCAACCGCCAGCAGCAGCAGATTGAACTCAGCCGGGCGCTGCGCACAGATGTCTCCCTGGTGCCACCCATCCGACAGACTGCCTCGATCTTCAAGCAACCGGTGACGGCGATTCGCAACCACAGCCAGGACCCGGCGAAGGTGAAACACGACGCCAAGCATGGCACTCAGGAGAAGCCCAAGCAGTTGTTCTGGGAGAAGCGACTGGAGCGACTGCGCGCCTGCCACGACAACGGCGAGGAGCTCGATGACATCTCACTGCCCAAAACCATACGCACTGTCGGCCCCAATGTCAATGAACAGACCGTCCTGCAATCGGTGGCCACCGCCCTGCACATGCTCAATGCCGGCGTGCACGGCCAGAGTTCGACAAAGGCTGACTTGACCAAGAATGCGATGGCATTCATGAATCCCGAACAGCCGCTCATGCATGCCGTGATCATCTCTGAGGACGATATACGAAAGCAGGAGGATCGGGTCGGTGTGGCGCGGCGAAAGCTGCAGGATGCCCTCAAAACATGA
- Protein Sequence
- MQNPSVTIERKRVDCSVLPKGWQREEVRKSGSSSNSNASAPNTNTTTTASNNNNNKVDVFYYSPTGKRVESKPQLARQLGGESFDIASFDFQSGKMQQQQQQQHHQRALPSPSISLYRCSAMPLPLTGSGGSGGHGSAANALKRKLARSQLGSQVGSAGSGSGTVATAAAAAAAASSSSSSSPTAANRQQQQIELSRALRTDVSLVPPIRQTASIFKQPVTAIRNHSQDPAKVKHDAKHGTQEKPKQLFWEKRLERLRACHDNGEELDDISLPKTIRTVGPNVNEQTVLQSVATALHMLNAGVHGQSSTKADLTKNAMAFMNPEQPLMHAVIISEDDIRKQEDRVGVARRKLQDALKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00480158;
- 90% Identity
- iTF_00490074;
- 80% Identity
- -