Drub004783.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila rubida
Gene Symbol
sip1
Assembly
GCA_035046165.1
Location
JAWNOF010000014.1:13783307-13786791[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-97 1.3e-93 313.4 15.3 2 275 422 692 421 692 0.98
2 2 0.37 1.9e+03 -2.1 0.0 160 268 707 730 698 746 0.52

Sequence Information

Coding Sequence
ATGTCGGATAATGAATACGAACGGTTCGAAATCACAGACTACGATCTGGACAATGAGTTCAACATAAACAGACCCCGGCGACGCCACACAAAACACCAGCAAATCTATGGCATTTGGGCGGATGACAGCGACAATGAGAGCGAGGGCGAGACGAGCGGACGCCGTGGGCGACGTGGCCTCGGCGGCAACTCAACTAGCAAGTCCAAGGACTACACGGCCCCAGTGAGCTTCGTGGCCGGCGGAATTCAACAAGCCGGCAAGAagtcgaagaagaagcagGAAGAGAAAGCGGCGGGCAGTGAAGATGAAGCCACAGATGACGATGGACAGAGCGAGGACGAGGCACGTCCAGCATTTGGAcgcaagcagccgcagctggtgGACAACAGcgatggcaacagcagcgataGCTCAGCGGAGGCGCAGGAGGACAAGAAGTCGCGACAGGCGGCCGCCATGTCGTCTCGCCACACGGCTGGATTGCGGCACAACTCGCACTTGCCGAGCAACCGCAACGTGGGCGCCTGGGAGCAGCATACGCGCGGCATTGGcgccaagctgctgctgcaaatgggCTACGAGCCGGGCAAAGGCTTGGGCAAGGATCTGCAGGGTATTTCGCAGCCGGTGCAAGCGCACGTGCGCAAAGGACGCGGCGCCATTGGCGCCTATGGCCCCGAGACGGCGGCCAGCATTGGCGGCAAGCCGAAACCGCAGCAAATCGAAGACGAAGCGCGCGACTCGAAGGAGTCCAAGGATCAGCTGAACAAGTGGAAGAAGGAGACGCGCGAAAAGTCCGGCAAGCGCTACTACTACAAGTCCGTGGAGGAGGTGATAGCCAAGGGCAAGAAGTCCGACCATTTGCTCTCCGAGAAGCTGAGCAAGCGCCTCGGCAACGTGCCCGTGATCGACATGACGGGGCCCGAGCGTCGTGTGCTCAGCGGCTACCATGCGCTGGCCCAGAACAAGGTGACGCCCGAGGAGTCGCTGTACGAGGCGCAGGACGAGCCGCGCACCACGCCCAGCTCGGTCTTCAGCATGCCCGAGCTGACGCACAACGTCCAGCTGCTGGTGAGCCAGTGCGAGCAGGAGATCATCGCCATTGACAAGACGGAACGCGAGTGCGCCGATCGGCAGGCGGCGCTGCAGCACGAGCAGTaccagctgcaggagctggtGCAGCTGGAGCGCAACCACATGACCACGCTGCAGGCGGCGCTCGCCCGCCTCGACCAGCTCAGCGAGAATCCCGAGCTCAGTCTGGCGCAGGCCGAGCAGCTCTTCCTCGAGCTGCAGCACGACTATGCGGCCGAGTACAAGGAGTTCGGCATGGCCGACCTGGCCGCAGGCGTCATAGCGCCGCTGCTGAAGCGCGAGCTGAGCGACTGGCAGCCGCTGGCGCAGCCcacgcagccgctgcagctgatcAAGCGCTGGCGCAGCATACTGCAGCGCGACAGCGAGGAGCCGGCGGAGCAGCAGTCGCGCAACGTCTTCGACCCATACTCGTCGCTGATCTGGGCGGGCGTGATGCCCTCGTTTCGCGGCTGCGCCGCCAGCTGGCAGCCCAAGGAGCACGCTCCGATGGCCGCGCTGCTCGACGCCtgggcgccgctgctgcccacCTGGGTGCTGGACTCggtgctggagcagctggtGCTGCCGCGCCTCACGCTCGGCGTGCAGGAGTGGGATCCGCTGACGGACACGGTGCCCATACACAGCTGGATACTGCCGTGGCACGGCATACTGGGCAGCAAGCTGGAGGAGTCCATCTACCCGCAGATACGCAGCAAACTGGGCGTGGCGCTGCAGGCGTGGTCGCCGCAGGATCGCTCCGCGCGCGCCATGCTCACGCCCTGGCAGTCGGCCTTtgccgaggagcagctgctgcagttcctgcTGCGCCACATCATACCCAAGCTGCAGGCGGTGCTGGCGGAGTTCGTGATCAATCCGCTGCAGCAGAACCTGGAGTTGTGGCACCAGGTGTGGGAGTGGCACGAGCTAATACCCGCCCCCCACATGGCCCAGCTGCTGGACAAGCACTTCTTTCCGCGCTGGATGCAGGTGCTCGTCATGTGGCTGAATCAGTCGCCCGACTACGCCGACATCTCGCGCTGGTACGCCGGCTGGAAGAACATGCTCAGCGAGGCCGTGCTGCGCGAGCCCTGCGTCAAGGAGCACTTGCGACGCGCCCTCGAGATGCTGCACCGTGCCACCGACGCCGTCCTGCAGACCAGCTccgcgccgccgccgcccatgcCGCCTGCGCCCGCTCCCGTGCTGCTCGCGCCCGTCCTGCTGGTGGACGTGGTGCAGCCTGCGCAGCTCGAGTTCAAGGAGCTCGTCTCGCAGAAGTGCGCCGAGCTGGGCATCATCTTTGCCCCGCTGCCAGGCCGCCGAGAACTCGGCAAGCAGATCTATCGCGTGGGCAAACTCTTCTGCTATATCGATCGCAACGTCTGCATGCTGAGCGATAGCAGCTTTACAAACTGGCAGCCCGTGGGACTTGCTCATCTCTTGGAACGAGCACAGACTGGCATCATCTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESEGETSGRRGRRGLGGNSTSKSKDYTAPVSFVAGGIQQAGKKSKKKQEEKAAGSEDEATDDDGQSEDEARPAFGRKQPQLVDNSDGNSSDSSAEAQEDKKSRQAAAMSSRHTAGLRHNSHLPSNRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASIGGKPKPQQIEDEARDSKESKDQLNKWKKETREKSGKRYYYKSVEEVIAKGKKSDHLLSEKLSKRLGNVPVIDMTGPERRVLSGYHALAQNKVTPEESLYEAQDEPRTTPSSVFSMPELTHNVQLLVSQCEQEIIAIDKTERECADRQAALQHEQYQLQELVQLERNHMTTLQAALARLDQLSENPELSLAQAEQLFLELQHDYAAEYKEFGMADLAAGVIAPLLKRELSDWQPLAQPTQPLQLIKRWRSILQRDSEEPAEQQSRNVFDPYSSLIWAGVMPSFRGCAASWQPKEHAPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTLGVQEWDPLTDTVPIHSWILPWHGILGSKLEESIYPQIRSKLGVALQAWSPQDRSARAMLTPWQSAFAEEQLLQFLLRHIIPKLQAVLAEFVINPLQQNLELWHQVWEWHELIPAPHMAQLLDKHFFPRWMQVLVMWLNQSPDYADISRWYAGWKNMLSEAVLREPCVKEHLRRALEMLHRATDAVLQTSSAPPPPMPPAPAPVLLAPVLLVDVVQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLSDSSFTNWQPVGLAHLLERAQTGII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
iTF_00509089;
80% Identity
-